Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq10791 141 2e-28 seq10792 122 2e-22 seq4123 118 3e-21 seq10790 114 3e-20 >seq10791 Length=597 Score = 141 bits (156), Expect = 2e-28 Identities = 158/210 (75%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || |||| || || | ||||| || ||||| || || || |||||||| Sbjct 191 TCCTCCTCGAAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGC 250 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || || |||||||| |||||||| || || ||||| ||||| |||||| ||||| Sbjct 251 AAGGGTACGACCGTCTTCCAATTGTTTACCGGCAAAGATTAGACGTTGTTGA---TCTGG 307 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | |||||||| ||||| ||||| || ||||| ||||| || || | || |||||| Sbjct 308 GGGGATTCCTTCCTTATCTTGGATCTTAGCTTTGACGTTATCAATCGTGTCCGACGATTC 367 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAG 288452 ||||| || ||||||||||| ||||| || Sbjct 368 CACTTCCAGAGTGATCGTCTTACCGGTGAG 397 >seq10792 Length=373 Score = 122 bits (134), Expect = 2e-22 Identities = 153/209 (73%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| ||||||| || || ||||||| || ||||||||||| || ||||| || Sbjct 22 TCCACCACGGAGTCGGAGAACCAGATGAAGGGTCGACTCTTTTTGGATGTTGTAGTCCGC 81 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT-- 288363 || ||||| ||||| || | ||| ||||| || || |||| ||| || || ||| Sbjct 82 AAGGGTGCGACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTG---GTCTGG 138 Query 288364 -GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||||| ||||| || || ||||| ||||| || ||||| || || | ||| || || Sbjct 139 GGGGATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCAATGGTGTCGGAGGACTC 198 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCA 288451 ||||| | |||||||| || ||||||| Sbjct 199 GACTTCCAAGGTGATCGTTTTGCCGGTCA 227 >seq4123 Length=2531 Score = 118 bits (130), Expect = 3e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGT-GCTTTCTTTTTGGATATTATAGTCGGC 288305 ||||| ||||| | || || | |||| || | ||||| | ||||||| || |||| Sbjct 725 CCACCACGGAGACGGAGAACCAAGTGAAGGGTTGATTTCTCCT-GGATATTGTAATCGGA 783 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || || || ||||| | ||| || || ||||| || ||||| || ||| | ||| Sbjct 784 CAAGGTACGACCATCTTCGAGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGTGG 843 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| || || || || ||||||||||| || ||||| || |||| || || ||||| || Sbjct 844 GATACCCTCCTTGTCTTGGATTTTCGCCTTGACGTTATCAATAGTGTCACTAGATTCAAC 903 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAG 288452 |||||| ||||||||||| || || || Sbjct 904 TTCGAGGGTGATCGTCTTGCCTGTAAG 930 Score = 118 bits (130), Expect = 3e-21 Identities = 153/210 (73%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || ||||| | || || | ||| | ||| || || ||||| || |||||||| Sbjct 1308 TCCTCCTCGGAGACGGAGGACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGC 1367 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT-- 288363 ||| ||||| |||||||| | ||||||||| || ||||| ||||| ||||| ||| Sbjct 1368 GAGGGTGCGACCGTCTTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTG---GTCTGG 1424 Query 288364 -GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 || || || || || || ||||| || || || ||||| || |||| |||| ||| || Sbjct 1425 AGGAATGCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTGTCAATAGTATCGGACGACTC 1484 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAG 288452 ||||| | ||||| ||||| || || || Sbjct 1485 AACTTCCAAAGTGATGGTCTTTCCTGTGAG 1514 Score = 118 bits (130), Expect = 3e-21 Identities = 153/210 (73%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || ||||||| || || | ||||| || ||||| || || || |||||||| Sbjct 1600 TCCTCCTCGGAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGC 1659 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTG- 288364 || || || ||||| || | |||||| || || ||||| | ||| |||||| |||| Sbjct 1660 AAGGGTACGACCGTCCTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGA---TCTGT 1716 Query 288365 --GGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 |||| ||||| || || ||||| || ||||| || || || || | || |||||| Sbjct 1717 GGGGATGCCTTCCTTGTCTTGGATCTTGGCTTTGACATTATCAATCGTGTCCGACGATTC 1776 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAG 288452 ||||| || ||||||||||| ||||| || Sbjct 1777 CACTTCCAGAGTGATCGTCTTACCGGTGAG 1806 Score = 107 bits (118), Expect = 5e-18 Identities = 150/209 (72%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| ||||||| || || ||||||| || ||||||||||| || ||||| || Sbjct 2181 TCCACCACGGAGTCGGAGAACCAGATGAAGGGTTGACTCTTTTTGGATGTTGTAGTCCGC 2240 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||| ||||| || | ||| ||||| || || |||| ||| || || ||||| Sbjct 2241 AAGAGTGCGACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTG---GTCTGG 2297 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | || ||||| || || || || ||||| || ||||| || || | || || || Sbjct 2298 GGGAATACCTTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCAATGGTGTCAGAGGACTC 2357 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCA 288451 ||||| | ||||||| || ||||||| Sbjct 2358 GACTTCCAAGATGATCGTTTTGCCGGTCA 2386 Score = 102 bits (112), Expect = 2e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| ||||| || || | ||||| ||| || ||||| || || || ||||| Sbjct 1021 TCCACCTCGGAGATGGAGAACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCGGC 1080 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || || || || || | ||| ||||| || ||||| |||||||||||| ||| Sbjct 1081 CAAAGTTCGACCATCCTCAAGTTGCTTTCCAGCAAAGATTAGACGCTGTTGATCCGGTGG 1140 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||||||||| ||||| ||||| || || || ||||| || |||| || ||||| || Sbjct 1141 GATTCCTTCCTTATCTTGGATCTTGGCCTTGACGTTGTCAATAGTGTCCGATGATTCGAC 1200 Query 288426 TTCGAGCGTGATCGTCTTCCCGGT 288449 || | ||||| || || || || Sbjct 1201 CTCCAAAGTGATGGTTTTGCCAGT 1224 Score = 87.8 bits (96), Expect = 4e-12 Identities = 124/173 (72%), Gaps = 6/173 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || || || || || || || ||||| || | ||| || || || ||| Sbjct 1923 TCCTTCTGAATGTTGTAATCAGCAAGGGTTCGGCCGTCCTCAAGTTGCTTGCCGGCAAAG 1982 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || ||||||||||| ||| ||| || || || ||||| ||||| || || || || Sbjct 1983 ATAAGACGCTGTTG---ATCCGGGGGAATGCCCTCCTTATCTTGGATCTTGGCCTTGACA 2039 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAG 288452 || || || | |||| || || |||||||| ||||| ||||| || || || Sbjct 2040 TTGTCGATGGTATCGGAGGACTCGACTTCGAGGGTGATGGTCTTTCCTGTAAG 2092 >seq10790 Length=2194 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | || | ||| ||| || ||||| || ||||||| Sbjct 1742 CCACCACGGAGACGGAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 1801 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || ||||| | ||| || || ||||| || ||||| || ||| | ||| Sbjct 1802 AAGGTACGGCCATCTTCGAGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGGGGG 1861 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || || ||||||||||| ||||| || || | || || ||||| ||| Sbjct 1862 ATACCTTCCTTGTCTTGAATTTTCGCTTTGACGTTATCGATGGTGTCACTGGATTCAACT 1921 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAG 288452 || || ||||||||||| || || || Sbjct 1922 TCAAGGGTGATCGTCTTGCCTGTGAG 1947 Score = 96.9 bits (106), Expect = 8e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| ||||| | || || || |||| ||| || |||||||| || || ||||| Sbjct 2037 TCCACCTCGGAGACGGAGAACCAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGC 2096 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || || || ||||| | ||| ||||| || ||||| | |||||||||| || Sbjct 2097 CAGAGTTCGACCATCTTCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCGGAGG 2156 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||||||| || || ||||| || || || ||||| Sbjct 2157 GATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTT 2192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179348214064924