Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq4577 82.4 9e-11 >seq4577 Length=12330 Score = 82.4 bits (90), Expect = 9e-11 Identities = 214/318 (67%), Gaps = 10/318 (3%) Strand=Plus/Minus Query 172651 ATCCGTCATAATCATAAGCCGACCATAGCGAAGCTCGGAAACAT-CTTGA-TACTCCTTA 172708 ||| ||||| ||||| | | |||||| ||||| | | | | || || || | ||| Sbjct 10614 ATCGGTCATGATCATTAAACTACCATATCGAAGA--GAATCCCTACTAGAGTATTTTTTA 10557 Query 172709 CCCTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGTTTGATGTGA-GTTG 172767 |||||||||||||||| ||| | |||| || ||||| | | || | || |||| Sbjct 10556 CCCTGTTGAAGACCCATGATTTGTTTGATATG-TTGAATTTCAGCATTCGAGAGAAGTTG 10498 Query 172768 CGC--CACTGAAGCATCGCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAG 172825 || |||| ||| || ||||| || | || || | || ||||| || || || Sbjct 10497 AGCACCACT--AGCTTCTCGGACGTTAAGAAGTTTACCCCTAAGCGGGAAAACGCCATAA 10440 Query 172826 TGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCC 172885 | ||||||||| | || || | ||||||||||| | || || || ||||| ||||| Sbjct 10439 TTATCACGACCGATAACCGATAATCCAGCAACTGCTAAGGATTTGGCTGAATCCCCCTCG 10380 Query 172886 GTCACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCCGCCTTGTTCGCATCGTCCAAC 172945 || | ||| | ||||| | | ||| || | || || || || || ||||| || || Sbjct 10379 GTTAAGATCAATGTACAATCTGCAGCTTTTCGTGTTCCAGCATTATTAGCATCTTCTAAT 10320 Query 172946 TTGGGAATACCAGTAATT 172963 || || || |||||| Sbjct 10319 TTCACTATTCCTGTAATT 10302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597202335134640