Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq4123 96.9 3e-15 seq10790 86.0 6e-12 seq10793 84.2 2e-11 seq10791 82.4 8e-11 >seq4123 Length=2531 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || |||| |||| || || || || |||||||||||||| || | ||| || |||| Sbjct 1902 AGGACTAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTTCGGCCGTCC 1961 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||| |||||||||||| | || || ||||| || || || ||||| || || || ||| Sbjct 1962 TCAAGTTGCTTGCCGGCAAAGATAAGACGCTGTTGATCCGGGGGAATGCCCTCCTTATCT 2021 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | ||||| || || ||||| | || | |||| Sbjct 2022 TGGATCTTGGCCTTGACATTGTCGATGGTATCGGAGGACTCGACTTCGAGGGTGATGGTC 2081 Query 64412 TTGCCGGT 64419 || || || Sbjct 2082 TTTCCTGT 2089 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || || |||||||| |||||||| || || | ||||| |||| Sbjct 2197 AGAACCAGATGAAGGGTTGACTCTTTTTGGATGTTGTAGTCCGCAAGAGTGCGACCGTCC 2256 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || ||||| |||||| |||| | || |||||||| || ||||| ||||| || ||| Sbjct 2257 TCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGGGAATACCTTCCTTGTCT 2316 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || || | || ||| || || ||||| | | | || Sbjct 2317 TGAATCTTCGCCTTGACGTTGTCAATGGTGTCAGAGGACTCGACTTCCAAGATGATCGTT 2376 Query 64412 TTGCCGGTCAA 64422 ||||||||||| Sbjct 2377 TTGCCGGTCAA 2387 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || | ||||| || || || ||||||||||||||||| || | || || | || Sbjct 1037 AGAACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCGGCCAAAGTTCGACCATCC 1096 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||| ||||| || ||| | || || ||||| || || || || |||||||| || ||| Sbjct 1097 TCAAGTTGCTTTCCAGCAAAGATTAGACGCTGTTGATCCGGTGGGATTCCTTCCTTATCT 1156 Query 64352 TGTATTTT 64359 || || || Sbjct 1157 TGGATCTT 1164 >seq10790 Length=2194 Score = 86.0 bits (94), Expect = 6e-12 Identities = 125/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || |||||||| || | | ||| || | ||||| || ||||||||| Sbjct 1772 GTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTACGGCCATCTTCGAGTTGCTTGCCG 1831 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || ||||||| || ||||| || || || || ||||| || ||||| | |||| ||||| Sbjct 1832 GCGAAAATGAGACGTTGCTGATCAGGGGGGATACCTTCCTTGTCTTG-AATTTTCGCTTT 1890 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 || || | || |||| || || ||||| | || | |||||||| || Sbjct 1891 GACGTTATCGATGGTGTCACTGGATTCAACTTCAAGGGTGATCGTCTTGCCTGT 1944 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || || || ||||| ||||||||||| || | || || | ||| Sbjct 2053 AGAACCAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGCCAGAGTTCGACCATCT 2112 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || ||||| |||||| | || | ||||| || || ||||| |||||||| || ||| Sbjct 2113 TCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCGGAGGGATTCCTTCCTTGTCT 2172 Query 64352 TGTATTTT 64359 || || || Sbjct 2173 TGGATCTT 2180 >seq10793 Length=1593 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| ||||| | || || || || || |||||||| || || | |||||| ||||||| Sbjct 240 CACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCTTC 299 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 | |||||| || ||| | || | ||||| || || || ||||| ||||| || ||||| Sbjct 300 CAACTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGGGGAATACCTTCCTTGTCTTG 359 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 || ||| ||| || || | || || | || || || | ||| | |||||| Sbjct 360 GATCTTTGCCTTGACGTTGTCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGTCTT 419 Query 64414 GCCGGT 64419 |||||| Sbjct 420 GCCGGT 425 >seq10791 Length=597 Score = 82.4 bits (90), Expect = 8e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || |||||||||| || || || || |||||||||||||| || | || || ||||| Sbjct 493 AGGACTAGATGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCAAGAGTTCGGCCGTCT 552 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 || || |||||||| ||| | || || ||||| ||||| || ||| Sbjct 553 TCGAGTTGCTTGCCAGCAAAGATAAGGCGCTGTTGGTCCGGGGGA 597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499518277445520