Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq4123 82.4 5e-11 >seq4123 Length=2531 Score = 82.4 bits (90), Expect = 5e-11 Identities = 132/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| ||||||||||| || || ||||| |||||||||||| | | ||| | || || Sbjct 1039 AACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCGGCCAAAGTTCGACCATCCTC 1098 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||| || ||||| | || | ||||||||| || ||| ||||||||||| || Sbjct 1099 AAGTTGCTTTCCAGCAAAGATTAGACGCTGTTGATCCGGTGGGATTCCTTCCTTATCTTG 1158 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTACGTCTAAGGTAATGGTTT 15145 || ||| || || | || ||||| || | || ||| || || || || ||||||| Sbjct 1159 GATCTTGGCCTTGACGTTGTCAATAGTGTC-CGATGATTCGACCTCCAAAGTGATGGTTT 1217 Query 15146 TACCTGT 15152 | || || Sbjct 1218 TGCCAGT 1224 Score = 82.4 bits (90), Expect = 5e-11 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 14944 TGTCTGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAA 15003 ||| | || ||||| | || | ||| |||||||||||||| ||||| || |||||||| Sbjct 1595 TGTATTCCTCCTCGGAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAG 1654 Query 15004 TCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCG 15063 ||| || | | |||| || | |||||| || || | || ||||| ||||| || Sbjct 1655 TCGGCAAGGGTACGACCGTCCTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCT 1714 Query 15064 TTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATC 15116 | || || ||||||||||| || ||| ||| ||| | || || || || Sbjct 1715 GTGGGGATGCCTTCCTTGTCTTGGATCTTGGCTTTGACATTATCAATCGTGTC 1767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357303761925530