Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq4123 109 5e-19 seq10792 105 7e-18 seq10793 98.7 1e-15 seq10790 98.7 1e-15 seq19 98.7 1e-15 >seq4123 Length=2531 Score = 109 bits (120), Expect = 5e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323 ||||| || || |||||||| | || || ||| | |||| | | | |||| | || Sbjct 1514 CTCACAGGAAAGACCATCACTTTGGAAGTTGAGTCGTCCGATACTATTGACAACG-TCAA 1456 Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 | || |||| ||||| ||||| ||||| | |||||||| || ||||| | || || Sbjct 1455 GGCTAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAACAACGTCTCATCTTTGCCGG 1396 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443 ||||| || || |||| ||||||||| ||||||||||||||| ||||| | || || Sbjct 1395 AAAACAACTTGAAGACGGTCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCCACACT 1336 Query 38444 GCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| || ||| | |||| || Sbjct 1335 CCATTTGGTCCTCCGTCTCCGAGGAGG 1309 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 || |||||||| |||| | | || |||||| || | |||| | | | |||| | || | Sbjct 2384 ACCGGCAAAACGATCATCTTGGAAGTCGAGTCCTCTGACACCATTGACAACG-TCAAGGC 2326 Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386 || || | ||||| || || |||||| | ||||| || || | |||| || || || Sbjct 2325 GAAGATTCAAGACAAGGAAGGTATTCCCCCAGACCAGCAACGTTTGATTTTTGCCGGAAA 2266 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 || ||||| |||| ||||| || ||||||||||||||||| || | || || || Sbjct 2265 GCAACTGGAGGACGGTCGCACTCTTGCGGACTACAACATCCAAAAAGAGTCAACCCTTCA 2206 Query 38447 TTTGGTGCTGCG 38458 | |||| || || Sbjct 2205 TCTGGTTCTCCG 2194 >seq10792 Length=373 Score = 105 bits (116), Expect = 7e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 || |||||||| |||||| | || |||||| || |||||| | | | |||| | || | Sbjct 225 ACCGGCAAAACGATCACCTTGGAAGTCGAGTCCTCCGACACCATTGACAACG-TCAAGGC 167 Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386 || |||| ||||| || || || ||| | ||||| || || | |||| || || || Sbjct 166 GAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAGCAACGTTTGATTTTTGCCGGAAA 107 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 || ||||| |||| |||||||| ||||||||||||||||| || |||| || || Sbjct 106 GCAACTGGAGGACGGTCGCACCCTTGCGGACTACAACATCCAAAAAGAGTCGACCCTTCA 47 Query 38447 TTTGGTGCTGCG 38458 | |||| || || Sbjct 46 TCTGGTTCTCCG 35 >seq10793 Length=1593 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323 || || ||||| |||||||| | || |||||| | |||||| | | | |||| | || Sbjct 428 CTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCTTCCGACACCATTGACAACG-TCAA 370 Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 | ||| |||| ||||| || || |||||| | || |||||||| | || | || || Sbjct 369 GGCAAAGATCCAAGACAAGGAAGGTATTCCCCCTGATCAACAGCGATTGATCTTTGCTGG 310 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443 || ||| |||| |||| |||||| | ||||||||||||||| ||||| | || | Sbjct 309 TAAGCAGTTGGAAGACGGCCGCACCTTGGCCGACTACAACATCCAGAAGGAGTCCACTTT 250 Query 38444 GCATTTGGTGCTGCGT 38459 |||| | ||| | ||| Sbjct 249 GCATCTCGTGTTACGT 234 >seq10790 Length=2194 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323 ||||| ||||| || |||||| | || || || ||| |||| | | | |||| | || Sbjct 1947 CTCACAGGCAAGACGATCACCCTTGAAGTTGAATCCAGTGACACCATCGATAACG-TCAA 1889 Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 || ||||| | ||||| || || || ||| | || || || || ||||||| ||| || Sbjct 1888 AGCGAAAATTCAAGACAAGGAAGGTATCCCCCCTGATCAGCAACGTCTCATTTTCGCCGG 1829 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443 ||| || || || || | || ||| | ||||||||||||||| |||||| | || || Sbjct 1828 CAAGCAACTCGAAGATGGCCGTACCTTGTCCGACTACAACATCCAGAAGGAATCCACCCT 1769 Query 38444 GCATTTGGTGCTGCGT 38459 || ||||| || ||| Sbjct 1768 CCACTTGGTCCTCCGT 1753 >seq19 Length=17389 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/213 (70%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 133218 GATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTC 133277 |||||| |||||||| || || || || || | | || |||||| | || | ||| Sbjct 11937 GATTTGGAAGCCGTAGAAACATCGAGCTTCAGCGATTTGAACTTCTCCACTAAACCTCTC 11878 Query 133278 GACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGAT 133337 || || || ||||||||||| || ||| ||| || || || || || || || ||||| Sbjct 11877 GATGAGGTTCTCGTTGACGATCCCATCGGAGGCAGCAAAGAAAGCGAGGACATGTTTGAT 11818 Query 133338 GAAATGGCGCTCGTTGTCGTTCAA---GCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTC 133394 ||| || ||||| | ||||| ||||||||| || | ||||| ||||| || Sbjct 11817 GAAGTGTTTCTCGTCCCCATTCAACTTATTATCCCAGTCGTGCATATCCTTCGACAGATC 11758 Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGC 133427 | |||||| | |||||||| || || ||||| Sbjct 11757 GATTTCCTCGGCTGTCCAAAAGGAAGCTTCGGC 11725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500046143742720