Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq3175 161 1e-34 seq9774 147 3e-30 seq4577 131 2e-25 seq5367 96.9 4e-15 seq3780 96.9 4e-15 seq7471 87.8 2e-12 >seq3175 Length=13629 Score = 161 bits (178), Expect = 1e-34 Identities = 184/245 (75%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 7900 CATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAA 7959 ||| ||| |||||| | |||| ||| |||| ||| || |||||||| ||||| || Sbjct 4419 CATGTCGGATTGGACTTCGGCGTCCTCAAATTTTCGTCCTATCAGACGCTTGGCATCGAA 4360 Query 7960 AACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTC 8019 || |||| | ||||||||||| ||||||||| || || || ||||| |||||||| Sbjct 4359 GACGGTGTGGTGAGGGTTCATGGCGACTTGGTTCTTGGCGGCATCACCGATCAGACGTTC 4300 Query 8020 ATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAAT 8079 | | | | || || || ||||| || || || |||||||| ||||||||||| ||||| Sbjct 4299 -TGAGT--CGGTGAAAGCAACGTAGGAAGGAGTTGTTCGATTTCCTTGGTCGTTGGCAAT 4243 Query 8080 AATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAAT 8139 || || || || || |||||||| || || ||||| || || || || || | |||||| Sbjct 4242 GATCTCAACTCGATCATTTTGCCATACACCAACGCAGGAGTAGGTGGTACCGAGATCAAT 4183 Query 8140 ACCGA 8144 ||||| Sbjct 4182 ACCGA 4178 Score = 120 bits (132), Expect = 4e-22 Identities = 194/279 (70%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 7127 GGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTT 7186 || || || || || |||||||| | ||||| || | || || | || || |||||| Sbjct 5409 GGAATACGAGTGGAACCACCGACAAGGACGATCTCGTGGACATTGGCCTTGTCAATCTTT 5350 Query 7187 GAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGT 7246 |||||||| || || ||||| || ||||| || ||||| | ||| | || || Sbjct 5349 GAGTCTCGGAGAACCTTCTCGACGGGCTCCATGGTCTTGCGGAAAAGGTCATTGCAGAGC 5290 Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 || || ||||| |||||||| | ||| || ||||| || | || || | | || || Sbjct 5289 TCTTCGAAACGAGCACGGGTGAGGGAAGTGTAGAAGTCGATACCCTCAAAAAGAGAGTCG 5230 Query 7307 ATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTT 7366 ||||| |||| ||||| || | || || || || || || || ||||| || || || Sbjct 5229 ATTTCGATGGAGGTTTGGGCGGCAGAGGACAAGGTACGTTTGGCACGCTCGCAAGCAGTG 5170 Query 7367 CGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCT 7405 || | |||||||| |||||| | ||| ||| | |||| Sbjct 5169 CGCAGACGACGAACGGCACGAGCGTTTGAGGAGAGATCT 5131 >seq9774 Length=29422 Score = 147 bits (162), Expect = 3e-30 Identities = 524/813 (64%), Gaps = 17/813 (2%) Strand=Plus/Minus Query 7014 CCGTTAAGAT-GGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATC 7072 ||| ||||| |||||||||||| | || ||||| ||||| ||||| |||||||| || Sbjct 6123 CCGGTAAGAACGGCGGCTTGGACGGCAGCACCGTAAGCGACAGCCTCGTCGGGGTTGATG 6064 Query 7073 GTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATT 7132 | || |||| || || ||| |||| || | || ||| || || ||||| Sbjct 6063 CTCTTGTTCAATTGACGTCCACCAAAGAAATCGGAAACCAGAGATTGGATCTTGGGGATA 6004 Query 7133 CGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCT 7192 || || ||||||||||| | ||||| || | ||||| | || || ||||| | ||| Sbjct 6003 CGGGTTGATCCACCGACAAGGACGATATCTTCAACTTTGGCCTTGTCAATCTTGGCGTCC 5944 Query 7193 CGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAA-GTC-CATACACAGTTCCT 7250 || || || || || || | | | ||||| || | | | || | Sbjct 5943 TTGAGAACCTTGTCAACGGGGTCGAGAGTTGATCGGAAGGTTGTGGCGTTGATC--TCTT 5886 Query 7251 CAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTT 7310 | || || || || | |||| | |||| ||| || | | | | || || | || Sbjct 5885 CGAATCGGGCTCGAGAGATGGCAGATGAGAAGTCAGTTCCTTGGAAGAGGGAGTCGACTT 5826 Query 7311 CAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTA 7370 | | ||| ||||| | ||||| | ||||| || || ||||| || || | || | Sbjct 5825 CGACGGTGGTTTGGGTAACGGAAGAGAGTGTTCGTTTGGCTCGCTCGCATGCAGAGCGAA 5766 Query 7371 AACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTT 7430 ||||||||||||||| | | || ||| || || || || || ||||| | Sbjct 5765 GACGACGAAGGGCACGGGCATCTCCATCAATGTCGAGTTTGGTCTTTCGCTTGAACTCGT 5706 Query 7431 CAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCG 7490 ||||||| |||||| ||||| || || || |||||||| || || || | Sbjct 5705 TTTTGAAGTGTTCAAGGAGAGCATTGTCGAAGTCCTCGCCTCCCAAGTGGGTGTCACCAG 5646 Query 7491 CGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTAC 7550 |||| |||||||| || | ||| || | ||| | | || ||||| || |||| Sbjct 5645 CGGTGGCTTTGACAGTGAAAACACCACCAGCGATGGAAAGGAGAGAGACATCGAAAGTAC 5586 Query 7551 CACCACCCAGGTCAAAAATGAGTAC-GTTCGTATCGTC--GTCTTTGTT---------CT 7598 |||| |||| ||| ||||| || || |||||| | || ||||| || || Sbjct 5585 CACCTCCCAAGTCGAAAATCAGGACGGTTCGTTCCTTCTTTTCTTTTTTCTCACTGGCCT 5526 Query 7599 TATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCA 7658 | | |||||||| ||||| || || || || || || || || ||||| || || || Sbjct 5525 CACCAAGACCGTAGGCGATGGCAGCGGCGGTGGGCTCGTTGATGATACGGAGCACGTCCA 5466 Query 7659 GGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCG 7718 | || || |||| | ||||| || || | || || || ||||| |||||||| | Sbjct 5465 GACCGGCGATAGCACCAGCATCCTTGGTGGACAACCGCTGTGAGTCGTTGAAGTAGGCGG 5406 Query 7719 GGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCA 7778 | || || | ||| || | | |||| | ||| || | | | || || | || || | Sbjct 5405 GCACGGTGATGACGGCCTTCTTGACCTCCTTGCCCAACTTGGTCTCGGCAGTCTCCTTGA 5346 Query 7779 TTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811 ||||| || ||||| | || ||||||| || Sbjct 5345 GCTTGGTGAGGACCATGGCGGAGATCTCTTGAG 5313 >seq4577 Length=12330 Score = 131 bits (144), Expect = 2e-25 Identities = 313/468 (67%), Gaps = 18/468 (4%) Strand=Plus/Minus Query 183122 ATATCTAACGGATTAAACGGTGGTATATATGAACTAAATCCGGTACCAATACCTTCAGTT 183181 || || | ||||||| | ||||||| |||||| |||| || ||||| || || | Sbjct 11795 ATCTCGATCGGATTATAGTTCGGTATATCTGAACTCCATCCAGTTCCAATCCCACTAGAT 11736 Query 183182 CCATTTACCAAAACGGTCGGTAATATAGGAACATAATAGTCAGGTTCGATTTGTTTACCG 183241 ||||| || | || ||||||| || || | ||| | || || ||||||||| |||| Sbjct 11735 CCATTCACTAGTACCATCGGTAAGATTGGGATATACCATTCCGGCTCGATTTGTGTACCA 11676 Query 183242 TCGTCGTCGAGATAGTTTAATACTGGATCATCTT----TGGGATCAAAA----AGTATTC 183293 || || | ||||||||| || ||||||| ||||| | | |||| || Sbjct 11675 TCATCCGTTAAATAGTTTAAGACGTTATCATCTGATGCTGGGAAAATCACTCTAGTAATC 11616 Query 183294 TCGCGTTTTTAGTCAATTTTGTAAATATATACCTGGTTTGACTCGCGTCTTTACCACCCA 183353 | ||| || || || || || |||||||| | | || ||||||||||| Sbjct 11615 T----TTTCTA--CA--TTAGTGAAAATATACCTTGCAGAAGCTGCATCTTTACCACCAG 11564 Query 183354 TGAGACGTGTACCAAATTGACCACATGGTTCGAGTAAATTAATATTATTCGACCCCGTAA 183413 | ||| ||||| ||||| ||| ||| ||| | |||||||||||| || || Sbjct 11563 AGGCACGAGTACCGAATTGGCCATTAGGTGAGAGGACATTAATATTATTACTTCCGACAA 11504 Query 183414 AATTATGTGCTAATTTTACAATTGTATCTGCCAAAGAGACTTCACCGTGGTGATACGATG 183473 |||| || |||||| || || || | | | | |||| || || ||||| | || Sbjct 11503 AATTTTGAGCTAATCCGACTATAGTTTGAGTGAGACTTGCTTCTCCATGATGATAGGCTG 11444 Query 183474 TTTTTTCCGAAACGTATGCGGCTAATTGCGCAACCTTCATTTCAGATGT-AAGATTCTTT 183532 | ||| ||| ||| | ||||||| || || || ||||||| | | || |||||| Sbjct 11443 AATGTTCTGAACAATATCCTCCTAATTGTGCTACTTTAATTTCAGCTTTCAATTTTCTTT 11384 Query 183533 GTGAAACACGCGTATAACACTTTTCGTTGGGATGGTTTTAAACCATCT 183580 | ||||| || |||| ||||| ||||| ||||| ||||||||| Sbjct 11383 -TAAAACATGCAAATAATACTTTACGTTGACCGGGTTTGAAACCATCT 11337 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/225 (70%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 184206 CACTCGCGTCACGCACGTTCTTACATTTACCCCTAAGCGGAAAAACACCGTAATGATCAC 184265 |||| || || || ||||| | ||||||||||||||| ||||| || |||| ||||| Sbjct 10492 CACTAGCTTCTCGGACGTTAAGAAGTTTACCCCTAAGCGGGAAAACGCCATAATTATCAC 10433 Query 184266 GACCAACAACTGAAAGACCAGCAATTGCAAGTGTTTTTGCAGAATCACCTTCGGTAATAA 184325 |||| | ||| || | ||||||| ||| | | ||| || ||||| || ||||| | | Sbjct 10432 GACCGATAACCGATAATCCAGCAACTGCTAAGGATTTGGCTGAATCCCCCTCGGTTAAGA 10373 Query 184326 TAAGAGTACACTTACCAGAGTGTGTGGTACCGGCTTTATTGGCATCGTCGAGTTTTGGAA 184385 | | ||||| | ||| | | || || || ||||| ||||| || | ||| | Sbjct 10372 TCAATGTACAATCTGCAGCTTTTCGTGTTCCAGCATTATTAGCATCTTCTAATTTCACTA 10313 Query 184386 TACCCGTTATTTTTGAT--TTACGAGACCCATCTGtttttttCAA 184428 | || || ||| ||||| || | || ||||| ||||| || || Sbjct 10312 TTCCTGTAATTCTTGATCGTTTC--GATCCATCGGTTTTCTTTAA 10270 >seq5367 Length=14932 Score = 96.9 bits (106), Expect = 4e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 22699 CAAAAATGTTTATACCTTGGTAACCTAGATGCGAAACGAGATTGGGGTCATGCACGCGAT 22758 ||| |||||||||| | || || || || || ||||||||||| ||||| ||| Sbjct 3254 CAAGAATGTTTATATTTAGGAAATTTATCAGCAAAGCGAGATTGGGGCCATGCCAAAGAT 3313 Query 22759 TACGTGAAATGTATGTGGAAAATATTACAACAAGATAAACCGGAAGATTTTGTTATTGCA 22818 || || | |||||||||| || |||||||||||| ||||||| |||||||| |||| Sbjct 3314 TATGTAGAGGGTATGTGGAAGATGTTACAACAAGATCAACCGGATGATTTTGTACTTGCT 3373 Query 22819 ACAGGCGTAAC 22829 || |||| ||| Sbjct 3374 ACTGGCGAAAC 3384 >seq3780 Length=22543 Score = 96.9 bits (106), Expect = 4e-15 Identities = 179/259 (69%), Gaps = 9/259 (3%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||||||||| || |||||||| || || || ||||| || ||| ||||||| ||| Sbjct 20290 ATCGAAATCTTCTCCTCCCAAGTGAGTGTCACCAGCGGTAGCCAAGACCTCAAAGACACC 20231 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAG---GTCAAAAATGAG 7572 | || || || | || ||||| || || ||||| || || || | ||||| Sbjct 20230 CTCATCGATCGATAGTAGTGAGACATCGAAAGTTCCACCTCCTAGATCGTATACAATGAT 20171 Query 7573 TACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGG 7632 | || | | || ||| |||| |||| || ||||| || || || || || ||||| Sbjct 20170 TTGGTGC-TCTC----CCTTCGTTC-TATCCAGTCCGTAGGCAATCGCTGCGGCAGTTGG 20117 Query 7633 TTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692 ||| || | ||| || || ||| || || ||||| || | ||||| || || ||||| Sbjct 20116 TTCGTTGACAATTCGGAGTACGTTAAGTCCGGCAATCGTACCGGCATCCTTGGTAGCTTG 20057 Query 7693 TCGTTGCGAATCGTTAAAG 7711 || || | ||||| ||| Sbjct 20056 ACGCTGAGCGTCGTTGAAG 20038 >seq7471 Length=3996 Score = 87.8 bits (96), Expect = 2e-12 Identities = 291/443 (66%), Gaps = 21/443 (5%) Strand=Plus/Minus Query 11251 ACATCAGGTAAAGAAACTTGTATTTTACGATCAAATCTACCGGGGCGTAATAACGCATCG 11310 ||||||||| | ||| || | |||||| |||||||| || | | ||| || | Sbjct 2039 ACATCAGGTCTATCAACAGCGATATGACGATCGAATCTACCTGGTCTGAGTAAAGCTTTA 1980 Query 11311 TCGAGTATATCGATACGGTTTGTTGCACCTATAACAACAATTT-CAGTTTCATTCTCGAA 11369 || |||| ||| ||| || || || ||| || || | | | | || | | ||||| Sbjct 1979 TCTAGTACATCAGCACGATTAGTACCAGCTAGGACGACGACATGCTGGTT-AGTATCGAA 1921 Query 11370 ACCATCCATTTCTGTTAATAATTGGTTAATTGTTTGTTCACGCTCATCGTTTGCCGCAAA 11429 || |||||||| || || ||| |||| || ||| || ||||||||| | | Sbjct 1920 GCCGTCCATTTCCACTAGTAGTTGATTAAGCGTAGATTCTCGTTCATCGTTTCC-----A 1866 Query 11430 CCCATTCATACTTCTTTTC--------TTACCAATCGCATCAATTTCATCTATAAAGATA 11481 ||||| | || ||||| |||||||||||||| || ||||||| ||| | | Sbjct 1865 CCCATGGCTCCTGATTTTCCTCGAGCTTTACCAATCGCATCTATCTCATCTACAAATACA 1806 Query 11482 ATACACGGTTGATT-TTCACGTGCCAATTCAAATATATCACGGACTCTTTTTGCGCCTAC 11540 || |||||| ||| ||| | || | |||||| ||| || |||| || ||||| Sbjct 1805 ATGCACGGTGCATTCTTCTTG-GCTGTTGCAAATAAATCTCGTACTCGAGATGGTCCTAC 1747 Query 11541 GCCTACAAACATTTCAACGAACGATGACCCCGAACACTGA-ATAAAAGGAACGGAAGATT 11599 || |||||||| || || || ||| || | | || || | || || || | || Sbjct 1746 TCCGACAAACATCTCTACAAATTCTGATCCTG-ATACCGATAGGAATGGTACACCTGCTT 1688 Query 11600 CACCCGCTATAGCACGTGCTAAAAGTGTTTTACCTGTACCTGGTTTACCTGTTAATAAT- 11658 | |||||| |||| |||| | || || || || ||||| ||||| ||| || Sbjct 1687 CTCCCGCTGTAGCTTTGGCTAGTAAGGTCTTCCCCGTTCCTGGCGGACCTG-AAATCATA 1629 Query 11659 GCACCCCTTGGTATTTTAGCACC 11681 || || | |||||||| || || Sbjct 1628 GCTCCTTTCGGTATTTTGGCTCC 1606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634971968496720