Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq4123 141 2e-28 seq10790 136 9e-27 seq10793 132 1e-25 seq10792 132 1e-25 >seq4123 Length=2531 Score = 141 bits (156), Expect = 2e-28 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||||| | ||| || ||||| || ||||||||||| || ||||| || |||||||| | Sbjct 2190 GAGTCGGAGAACCAGATGAAGGGTTGACTCTTTTTGGATGTTGTAGTCCGCAAGAGTGCG 2249 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 || || || || ||||| || || || || | ||||| |||||||| ||||| ||||| Sbjct 2250 ACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGGGAATACCTTC 2309 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||||||||||| || ||||||||| ||||||||||| || || ||||| | | | Sbjct 2310 CTTGTCTTGAATCTTCGCCTTGACGTTGTCAATGGTGTCAGAGGACTCGACTTCCAAGAT 2369 Query 195102 AACCGTCTTTCCTGTCAA 195119 | ||| || || ||||| Sbjct 2370 GATCGTTTTGCCGGTCAA 2387 Score = 131 bits (144), Expect = 4e-25 Identities = 137/180 (76%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || ||||| || ||||| |||||||| ||||| |||| || || || || || Sbjct 1910 GTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTTCGGCCGTCCTCAAGTTG 1969 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || |||||||| || ||||| || || |||||||| || || ||||| || || Sbjct 1970 CTTGCCGGCAAAGATAAGACGCTGTTGATCCGGGGGAATGCCCTCCTTATCTTGGATCTT 2029 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| || || ||||| || || || ||||| ||||| | ||||||||||| Sbjct 2030 GGCCTTGACATTGTCGATGGTATCGGAGGACTCGACTTCGAGGGTGATGGTCTTTCCTGT 2089 Score = 129 bits (142), Expect = 1e-24 Identities = 116/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| |||||||| |||||||| ||||||||||| | ||||| ||||| || || ||| Sbjct 1046 TGAAGGGTGGACTCCTTTTGAATGTTGTAATCGGCCAAAGTTCGACCATCCTCAAGTTGC 1105 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| || || ||||| || || || || ||||| || ||||| || || Sbjct 1106 TTTCCAGCAAAGATTAGACGCTGTTGATCCGGTGGGATTCCTTCCTTATCTTGGATCTTG 1165 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGA 195083 ||||||||| ||||| |||||||| Sbjct 1166 GCCTTGACGTTGTCAATAGTGTCCGA 1191 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || |||||||| || || || ||||| ||||| || || | || ||||| || || Sbjct 1333 TGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCTTCAAGTTGT 1392 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| || ||||||||||||||||||||||| || |||||||| || || Sbjct 1393 TTTCCGGCAAAGATGAGACGTTGTTGGTCTGGAGGAATGCCCTCCTTGTCTTGGATCTTA 1452 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| ||||| || || || || ||||| | || | ||||||||||| Sbjct 1453 GCCTTGACGTTGTCAATAGTATCGGACGACTCAACTTCCAAAGTGATGGTCTTTCCTGT 1511 Score = 127 bits (140), Expect = 5e-24 Identities = 142/187 (76%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTT 194989 ||| | |||||| || || | | || ||||||||||||| |||| || | ||||||| Sbjct 742 AACCAAGTGAAGGGTTGATTTCTCCTGGATATTGTAATCGGACAAG-GTACGACCATCTT 800 Query 194990 CGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTT 195049 |||| ||||| || ||||| || || ||||| || || || || || || || ||||||| Sbjct 801 CGAGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGTGGGATACCCTCCTTGTCTT 860 Query 195050 GAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCT 195109 | ||||| ||||||||| ||||| ||||| | ||| ||||| ||||| | ||||| Sbjct 861 GGATTTTCGCCTTGACGTTATCAATAGTGTCACTAGATTCAACTTCGAGGGTGATCGTCT 920 Query 195110 TTCCTGT 195116 | ||||| Sbjct 921 TGCCTGT 927 >seq10790 Length=2194 Score = 136 bits (150), Expect = 9e-27 Identities = 113/138 (82%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||||||||||||||| ||||| || ||||||||||| ||||||| |||||||| Sbjct 2055 AACCAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGCCAGAGTTCGACCATCTTC 2114 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||| ||||| || || ||||| | || ||||| || ||||| || ||||| |||||||| Sbjct 2115 GAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCGGAGGGATTCCTTCCTTGTCTTG 2174 Query 195051 AATTTTTTGCTTGACGTT 195068 || || ||||||||| Sbjct 2175 GATCTTGGCCTTGACGTT 2192 Score = 132 bits (146), Expect = 1e-25 Identities = 142/184 (77%), Gaps = 8/184 (4%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCT 194995 ||| || ||||| || || || || ||||| |||| |||| || | ||||||||||| | Sbjct 1765 GTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAG-GTACGGCCATCTTCGAGTT 1823 Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 |||| || ||||| || || ||||| || || || || || ||||| ||||||||||||| Sbjct 1824 GCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGGGGGATACCTTCCTTGTCTTGAATTT 1883 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTC 195112 | |||||||| || |||||||| ||| ||| ||||||||||| | |||||| | Sbjct 1884 TCGCTTTGACGTTATCGATGGTGTC---ACTGGATTCAACTTCAAGGGTGATCGTCTTGC 1940 Query 195113 CTGT 195116 |||| Sbjct 1941 CTGT 1944 >seq10793 Length=1593 Score = 132 bits (146), Expect = 1e-25 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || || || || | ||||||||| || || || ||||| ||||| | || | || ||| Sbjct 238 AACACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCT 297 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 || | ||||||||| || ||||| | ||| ||||| || || ||||| ||||| |||||| Sbjct 298 TCCAACTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGGGGAATACCTTCCTTGTCT 357 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 || || ||| ||||||||| ||||||||||| ||| || || ||||| || | ||| Sbjct 358 TGGATCTTTGCCTTGACGTTGTCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGTC 417 Query 195109 TTTCCTGT 195116 || || || Sbjct 418 TTGCCGGT 425 Score = 109 bits (120), Expect = 1e-18 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||| ||||| || |||||||| |||||||||||||| || ||||| || Sbjct 5 CCATCTTCCAGCTGTTTACCGGCAAAGATAAGACGTTGTTGGTCTGGCGGGATGCCCTCC 64 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || ||||| || || ||||||||| ||||| |||||||| || || || ||||| Sbjct 65 TTATCTTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGAGGACTCAACCTCTAGGGTG 124 Query 195103 ACCGTCTTTCCTGTCAAA 195120 | || || || || ||| Sbjct 125 ATGGTTTTGCCAGTTAAA 142 >seq10792 Length=373 Score = 132 bits (146), Expect = 1e-25 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||||| | ||| || ||||| || ||||||||||| || ||||| || ||||| || | Sbjct 31 GAGTCGGAGAACCAGATGAAGGGTCGACTCTTTTTGGATGTTGTAGTCCGCAAGGGTGCG 90 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 || || || || ||||| || || || || | ||||| |||||||| || || ||||| Sbjct 91 ACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGGGGATACCTTC 150 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 |||||||| || || ||||||||| ||||||||||| || || ||||| | ||| Sbjct 151 CTTGTCTTGGATCTTCGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGACTTCCAAGGT 210 Query 195102 AACCGTCTTTCCTGTCAA 195119 | ||| || || ||||| Sbjct 211 GATCGTTTTGCCGGTCAA 228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109193627809886