Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq10791 145 6e-30 seq4123 145 6e-30 seq10793 116 3e-21 seq10790 104 2e-17 seq10792 102 6e-17 >seq10791 Length=597 Score = 145 bits (160), Expect = 6e-30 Identities = 155/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||||| | || | ||| |||||||||||||| ||||| || || ||||| |||| Sbjct 190 TTCCTCCTCGAAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGG 249 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | || | | || |||||||| ||||| ||||| || | ||| |||||||| || | Sbjct 250 CAAGGGTACGACCGTCTTCCAATTGTTTACCGGCAAAGATTAGACGTTGTTGATCTGGGG 309 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || ||||| |||||||| || || ||| || | || | ||||| |||| ||||| Sbjct 310 GGATTCCTTCCTTATCTTGGATCTTAGCTTTGACGTTATCAATCGTGTCCGACGATTCCA 369 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGT 101445 |||| ||||||| ||| || ||||| Sbjct 370 CTTCCAGAGTGATCGTCTTACCGGT 394 >seq4123 Length=2531 Score = 145 bits (160), Expect = 6e-30 Identities = 155/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||||| | || | ||| |||||||||||||| ||||| || || ||||| |||| Sbjct 1599 TTCCTCCTCGGAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGG 1658 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | || | | || |||| ||| ||||| ||||| || ||||| |||||||| | | Sbjct 1659 CAAGGGTACGACCGTCCTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGTGG 1718 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | |||||||| || ||||| || || ||| ||| | || | ||||| |||| ||||| Sbjct 1719 GGATGCCTTCCTTGTCTTGGATCTTGGCTTTGACATTATCAATCGTGTCCGACGATTCCA 1778 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGT 101445 |||| ||||||| ||| || ||||| Sbjct 1779 CTTCCAGAGTGATCGTCTTACCGGT 1803 Score = 136 bits (150), Expect = 3e-27 Identities = 155/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| |||| | | | | ||| ||||||||||| || || ||||| || |||||||||| Sbjct 1020 TTCCACCTCGGAGATGGAGAACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCGG 1079 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | ||||| |||| || | |||||| || ||||| || | |||||||||||| || | Sbjct 1080 CCAAAGTTCGACCATCCTCAAGTTGCTTTCCAGCAAAGATTAGACGCTGTTGATCCGGTG 1139 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || ||||| |||||||| || || || || | || | |||||| || | ||| | Sbjct 1140 GGATTCCTTCCTTATCTTGGATCTTGGCCTTGACGTTGTCAATAGTGTCCGATGATTCGA 1199 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAA 101448 | || | ||||| |||||||| ||||| Sbjct 1200 CCTCCAAAGTGATGGTTTTGCCAGTTAA 1227 Score = 120 bits (132), Expect = 2e-22 Identities = 142/190 (75%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| | ||||||||| || |||||||| || ||||| || || | ||| | | || || Sbjct 2199 AACCAGATGAAGGGTTGACTCTTTTTGGATGTTGTAGTCCGCAAGAGTGCGACCGTCCTC 2258 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 || |||||| || ||||| |||||||| || || || || ||||| ||||| || ||||| Sbjct 2259 CAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGGGAATACCTTCCTTGTCTTG 2318 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTC-AAGAGTGACCGTTT 101438 ||| || || || | || | |||||||| | || ||||| |||| ||| ||||| Sbjct 2319 AATCTTCGCCTTGACGTTGTCAATGGTGTCAGAGGACTCGACTTCCAAGA-TGATCGTTT 2377 Query 101439 TGCCGGTTAA 101448 ||||||| || Sbjct 2378 TGCCGGTCAA 2387 Score = 109 bits (120), Expect = 4e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||| | ||| | ||||| ||||||||||| || || || || |||||||| || Sbjct 1887 CCACCTCGAAGACGGAGGACTAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCA 1946 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||| | | || || | |||||| || ||||| || | |||||||||||| || ||| Sbjct 1947 AGGGTTCGGCCGTCCTCAAGTTGCTTGCCGGCAAAGATAAGACGCTGTTGATCCGGGGGA 2006 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| || |||||||| || || || ||| | || | || || || | || ||| Sbjct 2007 ATGCCCTCCTTATCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGGAGGACTCGACT 2066 Query 101423 TCAAGAGTGACCGTTTTGCCGGT 101445 || || |||| || || || || Sbjct 2067 TCGAGGGTGATGGTCTTTCCTGT 2089 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| || |||||||| |||| | || ||||||||||||| | || | | Sbjct 736 ACGGAGAACCAAGTGAAGGGTTGATTTCTCCTGGATATTGTAATCGGACAAGGTACGACC 795 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | |||||| || || || || | ||| || ||||| || || || || || || Sbjct 796 ATCTTCGAGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGTGGGATACCCTCCTT 855 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| ||||| || || | || | ||||||| | ||| ||||| || |||| Sbjct 856 GTCTTGGATTTTCGCCTTGACGTTATCAATAGTGTCACTAGATTCAACTTCGAGGGTGAT 915 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATAT 101463 ||| ||||| || |||| | || | |||| Sbjct 916 CGTCTTGCCTGT--AAGTCTGTAAAGATAT 943 >seq10793 Length=1593 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 |||||| || | ||| | || || || || || || ||||| ||||| | || | | | Sbjct 234 ACGTAACACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCC 293 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || ||||| |||||||| ||||| ||||| ||||||||||| || ||||| ||||| || Sbjct 294 GTCTTCCAACTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGGGGAATACCTTCCTT 353 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| || ||| || || | || | ||||| || | || || |||||||||| Sbjct 354 GTCTTGGATCTTTGCCTTGACGTTGTCAATGGTGTCGGAAGACTCGACCTCAAGAGTGAT 413 Query 101434 CGTTTTGCCGGT 101445 || |||||||| Sbjct 414 GGTCTTGCCGGT 425 >seq10790 Length=2194 Score = 104 bits (114), Expect = 2e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| |||| | ||| | ||| | ||||| || || || ||||| || |||||||||| Sbjct 2036 TTCCACCTCGGAGACGGAGAACCAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGG 2095 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | ||||| |||| || | |||||| || ||||| || |||||||||||||| || | Sbjct 2096 CCAGAGTTCGACCATCTTCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCGGAG 2155 Query 101361 GAATGCCTTCTTTATCTTGAATTTT 101385 | || ||||| || ||||| || || Sbjct 2156 GGATTCCTTCCTTGTCTTGGATCTT 2180 Score = 100 bits (110), Expect = 2e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || ||||| ||||| || || || ||||| |||| | || | | |||| || Sbjct 1760 ACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTACGGCCATCTTCG 1819 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | |||||| || || || || | ||| || ||||| || || || ||||| || |||||| Sbjct 1820 AGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGGGGGATACCTTCCTTGTCTTGA 1879 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| ||| || | || | |||||| | ||| |||||||| |||| ||| ||| Sbjct 1880 ATTTTCGCTTTGACGTTATCGATGGTGTCACTGGATTCAACTTCAAGGGTGATCGTCTTG 1939 Query 101441 CCGGT 101445 || || Sbjct 1940 CCTGT 1944 >seq10792 Length=373 Score = 102 bits (112), Expect = 6e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| | ||||||||| || |||||||| || ||||| || || | || | | || || Sbjct 40 AACCAGATGAAGGGTCGACTCTTTTTGGATGTTGTAGTCCGCAAGGGTGCGACCGTCCTC 99 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 || |||||| || ||||| |||||||| || || || || || || ||||| || ||||| Sbjct 100 CAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCTTG 159 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 || || || || | || | ||||| || | || ||||| | |||| |||||| Sbjct 160 GATCTTCGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGACTTCCAAGGTGATCGTTTT 219 Query 101440 GCCGGTTAA 101448 |||||| || Sbjct 220 GCCGGTCAA 228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396180561092106