Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq4123 91.5 1e-13 seq10793 82.4 6e-11 seq10791 82.4 6e-11 >seq4123 Length=2531 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || |||||| ||||| ||||| || | || | ||| |||| ||| Sbjct 1619 ACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCAAGGGTACGACCGTCCTCC 1678 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | || ||||||||||| || | || |||||||| ||||| | ||| |||||||| Sbjct 1679 AGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGTGGGGATGCCTTCCTTGTCTTGG 1738 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| ||| ||| | | | | || |||| ||||| |||| || ||||| || Sbjct 1739 ATCTTGGCTTTGACATTATCAATCGTGTCCGACGATTCCACTTCCAGAGTGATCGTCTTA 1798 Query 48738 CCCGT 48742 || || Sbjct 1799 CCGGT 1803 Score = 89.7 bits (98), Expect = 4e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || ||||| |||||||||| || |||| |||| || | ||||| |||||||| Sbjct 1922 CTCCTTCTGAATGTTGTAATCAGCAAGGGTTCGGCCGTCCTCAAGTTGCTTGCCGGCAAA 1981 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 || || ||||||||||||| ||||| ||||||||| || Sbjct 1982 GATAAGACGCTGTTGATCCGGGGGAATGCCCTCCTTATC 2020 >seq10793 Length=1593 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || ||||| | ||| | ||| ||| || || || ||||| || | | | || Sbjct 232 AGACGTAACACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGG 291 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||||||||||||| ||||| |||| |||||||||||| | ||||| || ||| Sbjct 292 CCGTCTTCCAACTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGGGGAATACCTTCC 351 Query 48669 TTGTC 48673 ||||| Sbjct 352 TTGTC 356 >seq10791 Length=597 Score = 82.4 bits (90), Expect = 6e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || |||||| ||||| ||||| || | || | ||| |||| ||| Sbjct 210 ACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCAAGGGTACGACCGTCTTCC 269 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || ||||||||||| || || || |||||||| | ||| | || ||||| || Sbjct 270 AATTGTTTACCGGCAAAGATTAGACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGG 329 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| ||| || | | | | || |||| ||||| |||| || ||||| || Sbjct 330 ATCTTAGCTTTGACGTTATCAATCGTGTCCGACGATTCCACTTCCAGAGTGATCGTCTTA 389 Query 48738 CCCGT 48742 || || Sbjct 390 CCGGT 394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380843548649334