Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq10790 105 4e-17 seq4123 105 4e-17 seq10791 91.5 1e-12 >seq10790 Length=2194 Score = 105 bits (116), Expect = 4e-17 Identities = 108/139 (78%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGAG 480609 || |||||||| || || ||||| || ||| ||| || || ||||| || |||| Sbjct 2044 CGGAGACGGAGAACCAGGTGAAGAGTGGACTCCTTTTGGATG--TTGTAATCGGCCAGAG 2101 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 ||| |||||| ||||||||||| ||||| || | ||| |||||||| ||||| |||| Sbjct 2102 TTCGACCATCTTCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCGGAGGGATTC 2161 Query 480670 CTTCCTTGTCTTGAATCTT 480688 ||||||||||||| ||||| Sbjct 2162 CTTCCTTGTCTTGGATCTT 2180 Score = 100 bits (110), Expect = 2e-15 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| |||||||| || || ||||| |||||||| |||||||| || || |||||||| Sbjct 1813 ATCTTCGAGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGGGGGATACCTTCCTT 1872 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||||||||| || |||||| || || || ||| || | | ||||||||| || Sbjct 1873 GTCTTGAATTTTCGCTTTGACGTTATCGATGGTGTCACTGGATTCAACTTCAAGGGTGAT 1932 Query 480737 AGTTTTACCGGTGAG 480751 || || || ||||| Sbjct 1933 CGTCTTGCCTGTGAG 1947 >seq4123 Length=2531 Score = 105 bits (116), Expect = 4e-17 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||||||||| || | ||||| ||| || || || || |||||||| || ||| Sbjct 1893 CGAAGACGGAGGACTAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTT 1952 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | || ||||||||||| || ||||| |||||||| |||||||| || ||||| || Sbjct 1953 CGGCCGTCCTCAAGTTGCTTGCCGGCAAAGATAAGACGCTGTTGATCCGGGGGAATGCCC 2012 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 ||||| ||||| ||||| |||||| || || ||||| Sbjct 2013 TCCTTATCTTGGATCTTGGCCTTGACATTGTCGATGGTATC 2053 Score = 104 bits (114), Expect = 2e-16 Identities = 123/163 (75%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGAG 480609 || ||| |||| || | |||||| || ||| |||| ||| || ||||| || | || Sbjct 1028 CGGAGATGGAGAACCAAATGAAGGGTGGACTC-CTTTTGAATG-TTGTAATCGGCCAAAG 1085 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 ||| ||| |||||||||||||||||||| || ||||| |||||||| || || |||| Sbjct 1086 TTCGACCATCCTCAAGTTGCTTTCCAGCAAAGATTAGACGCTGTTGATCCGGTGGGATTC 1145 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 ||||||| ||||| ||||| ||||| |||||||| || Sbjct 1146 CTTCCTTATCTTGGATCTTGGCCTTGACGTTGTCAATAGTGTC 1188 Score = 96.9 bits (106), Expect = 2e-14 Identities = 122/166 (73%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 ||| || ||||| || |||||||| || ||| | ||| || || || || || ||| Sbjct 2187 ACGGAGTCGGAGAACCAGATGAAGGGTTGACTCTTTTTGGATG--TTGTAGTCCGCAAGA 2244 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 || | || || ||||||||||| |||||||| | |||||| || || || ||||| Sbjct 2245 GTGCGACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGGGAATA 2304 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG 480714 |||||||||||||||||||| ||||| ||||| || |||| Sbjct 2305 CCTTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCAATGGTGTCAG 2350 Score = 95.1 bits (104), Expect = 8e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||||||||| ||||| ||||| || ||||||||||| || |||||||| || |||||| Sbjct 1381 TCTTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGAGGAATGCCCTCCTTG 1440 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 ||||| ||||| ||||| ||||||||||| Sbjct 1441 TCTTGGATCTTAGCCTTGACGTTGTCAATAGTATC 1475 >seq10791 Length=597 Score = 91.5 bits (100), Expect = 1e-12 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||| ||||| || | |||||| ||| ||||| || || || || || || || Sbjct 198 CGAAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCAAGGGTA 257 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | ||||| | ||| || || ||||| || |||||||||||||| || || |||||| Sbjct 258 CGACCGTCTTCCAATTGTTTACCGGCAAAGATTAGACGTTGTTGATCTGGGGGGATTCCT 317 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 ||||| ||||| ||||| |||||| ||||| || || | | ||| || Sbjct 318 TCCTTATCTTGGATCTTAGCTTTGACGTTATCAATCGTGTCCGACGATTCCACTTCCAGA 377 Query 480732 GTAATAGTTTTACCGGTGAG 480751 || || || ||||||||||| Sbjct 378 GTGATCGTCTTACCGGTGAG 397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267310236088184