Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq10793 91.5 3e-13 seq4123 89.7 9e-13 seq10790 86.0 1e-11 >seq10793 Length=1593 Score = 91.5 bits (100), Expect = 3e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | || | || |||||||| || | ||| || || || Sbjct 214 ATTTGCATACCACCACGAAGACGTAACACGAGATGCAAAGTGGACTCCTTCTGGATGTTG 273 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||||| || || | || || || || || || ||||| || |||| ||||||| Sbjct 274 TAGTCGGCCAAGGTGCGGCCGTCTTCCAACTGCTTACCAGCAAAGATCAATCGCTGTTGA 333 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || || ||||| || ||||| || || | || | || ||| || |||||| Sbjct 334 TCAGGGGGAATACCTTCCTTGTCTTGGATCTTTGCCTTGACGTTGTCAATGGTGTCGGAA 393 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAG 193339 ||||| || || ||||| || || || || || || Sbjct 394 GACTCGACCTCAAGAGTGATGGTCTTGCCGGTAAG 428 >seq4123 Length=2531 Score = 89.7 bits (98), Expect = 9e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || |||| ||| | ||| | ||| || || || ||||||| | || | | Sbjct 1321 CGGAGGACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCG 1380 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||||||||||||||| || | | ||||| || ||||| || || || || Sbjct 1381 TCTTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGAGGAATGCCCTCCTTG 1440 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | || | || |||||||||||| ||||||||||| | ||| || Sbjct 1441 TCTTGGATCTTAGCCTTGACGTTGTCAATAGTATCGGACGACTCAACTTCCAAAGTGATG 1500 Query 193326 GTTTTACCTGTTAG 193339 || || ||||| || Sbjct 1501 GTCTTTCCTGTGAG 1514 >seq10790 Length=2194 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||||| | || || ||||| || | || | ||| || || || Sbjct 2028 AATTTGCATTCCACCTCGGAGACGGAGAACCAGGTGAAGAGTGGACTCCTTTTGGATGTT 2087 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || |||| | |||| | ||| || | ||| ||||||||||| ||||| | |||||| Sbjct 2088 GTAATCGGCCAGAGTTCGACCATCTTCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTG 2147 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGG 193278 ||| ||||| |||||||| || ||||| || |||| Sbjct 2148 ATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGG 2182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899426585014560