Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq19 118 2e-21 >seq19 Length=17389 Score = 118 bits (130), Expect = 2e-21 Identities = 185/263 (70%), Gaps = 15/263 (6%) Strand=Plus/Minus Query 18005 ACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAAAGGTAGAGCATCAATA 18064 ||||| || ||||||| ||| ||||||||| | ||| || | || |||||||| Sbjct 12547 ACATACTGGCACATCAAGTCGGCATTCATACCGATAAGTTTGCAGGGAAGAGCATCCGAG 12488 Query 18065 ATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTATTACCCTAGATTTTGGC 18124 | ||| |||||||||||||| |||| ||| ||| | | | | || | | | Sbjct 12487 AGAAACTCTTTCTCTATCTCGACAG---CTTGAGCAATGAT----AGCTTGGACTGTATC 12435 Query 18125 AATTTATTAATTATGTGATTATAAT------ATAATAAACACGCAAAATCAGTGTGTAAA 18178 | || | | || | | ||| |||||| |||||||||||| |||||||| Sbjct 12434 --TGGATGAGGTCTGCGCTCTAAATGGGAGAATAATAGACACGCAAAATCGGTGTGTAAT 12377 Query 18179 CCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCttttt 18238 ||||||||||| || |||| |||||| ||||||| || ||||||| ||||| || Sbjct 12376 CCTTCATCTCTTGAGATTAGTTCGTTCGAGAACGTTAGGCCCGGCATTAATCCTCTCTTC 12317 Query 18239 tttAGCCAAAATATCGATGCGAA 18261 |||||||| || ||||||||||| Sbjct 12316 TTTAGCCAGAAAATCGATGCGAA 12294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731686671712800