Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq10791 120 5e-22 seq10793 96.9 6e-15 >seq10791 Length=597 Score = 120 bits (132), Expect = 5e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || |||| |||||| | || ||||| | |||| |||||| ||| || || || Sbjct 189 ATTCCTCCTCGAAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCG 248 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || |||| |||||||||||||| ||||| |||| | ||||| || || Sbjct 249 GCAAGGGTACGACCGTCTTCCAATTGTTTACCGGCAAAGATTAGACGTTGTTGATCTGGG 308 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| |||||||| || ||| ||| || ||| || || || |||||||| Sbjct 309 GGGATTCCTTCCTTATCTTGGATCTTAGCTTTGACGTTATCAATCGTGTCCGACGATTCC 368 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGT 172045 ||||| ||||| || || ||||| || Sbjct 369 ACTTCCAGAGTGATCGTCTTACCGGT 394 >seq10793 Length=1593 Score = 96.9 bits (106), Expect = 6e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| ||||| || | ||| ||||| | ||| || || || || || Sbjct 220 ATACCACCACGAAGACGTAACACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCG 279 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | || |||| ||||| || ||||||||||| || |||| |||||| ||||| Sbjct 280 GCCAAGGTGCGGCCGTCTTCCAACTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGG 339 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || || || || || || || || || || Sbjct 340 GGAATACCTTCCTTGTCTTGGATCTTTGCCTTGACGTTGTCAATGGTGTCGGAAGACTCG 399 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGT 172045 || || ||||| ||||| || || || Sbjct 400 ACCTCAAGAGTGATGGTCTTGCCGGT 425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904906796936400