Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4577 159 1e-33 seq7471 87.8 5e-12 >seq4577 Length=12330 Score = 159 bits (176), Expect = 1e-33 Identities = 271/390 (69%), Gaps = 2/390 (1%) Strand=Plus/Minus Query 59957 ATCGGATTATGGGACATAATATCTGTGCTAAAACCAGTACCAATACCCTTTGTTCCATTG 60016 |||||||||| | | ||||||| || | ||||| ||||| || | | |||||| Sbjct 11789 ATCGGATTATAGTTCGGTATATCTGAACTCCATCCAGTTCCAATCCCACTAGATCCATTC 11730 Query 60017 ATAAGAATCATCGGGATAATTGGGATATAATAAACTGGCTCAACACTATCACCATCATCT 60076 | || | |||||| | ||||||||||| | | ||||| | ||||||||| Sbjct 11729 ACTAGTACCATCGGTAAGATTGGGATATACCATTCCGGCTCGATTTGTGTACCATCATCC 11670 Query 60077 TTTAAGTATGTTAAAACCTTGTCGTCAATTTCGGGAAATATAGCCCGAGTAATCTTGGAT 60136 |||| || |||| || || || || | | || || || | | ||||||||| | Sbjct 11669 GTTAAATAGTTTAAGACGTTATCATCTGATGCTGGGAAAATCACTCTAGTAATCTTTTCT 11610 Query 60137 AATTGTGTGAAAATATACCTCTCGGATGCTGCGTCCTTGCCACCCATAAG-ACGGGTTCC 60195 | | |||||||||||||| | || ||||| || || ||||| | | | ||| || || Sbjct 11609 ACATTAGTGAAAATATACCTTGCAGAAGCTGCATCTTTACCACC-AGAGGCACGAGTACC 11551 Query 60196 AAATTGTCCGTTTGGCTGGAATAGATTAATGTTGTTAGAGCCTACGAAATTTTGAGCGAG 60255 ||||| || || || || | |||||| || ||| || || ||||||||||| | Sbjct 11550 GAATTGGCCATTAGGTGAGAGGACATTAATATTATTACTTCCGACAAAATTTTGAGCTAA 11491 Query 60256 ACCAACAATAGCACCATTTAAACTGGCTTCACCGTGATGATATCCAGAATGTTCTGAAAC 60315 || || |||| | | | ||| ||||| || |||||||| | |||||||||||| Sbjct 11490 TCCGACTATAGTTTGAGTGAGACTTGCTTCTCCATGATGATAGGCTGAATGTTCTGAACA 11431 Query 60316 ATATCCACTGAATTGTGCGACTTTAATTTC 60345 |||||| | |||||||| ||||||||||| Sbjct 11430 ATATCCTCCTAATTGTGCTACTTTAATTTC 11401 >seq7471 Length=3996 Score = 87.8 bits (96), Expect = 5e-12 Identities = 162/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 289026 TTTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAAT 289085 |||||||| ||||| || || || | || | | ||||| | ||| | | || | Sbjct 1839 TTTACCAATCGCATCTATCTCATCTACAAATACAATGCACGGTGCATTCTTCTTGGCTGT 1780 Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 ||||||||| |||| ||| || |||| ||| | || ||| |||| ||||||||||| || Sbjct 1779 TGCAAATAAATCTCGTACTCGAGATGGTCCTACTCCGACAAACATCTCTACAAATTCTGA 1720 Query 289146 AGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205 | ||||| | ||||| |||| |||||| || ||| || | || || | || Sbjct 1719 TCCTGATACCGATAGGAATGGTACACCTGCTTCTCCCGCTGTAGCTTTGGCTAGTAAGGT 1660 Query 289206 CTTACCTGTTCCAGGTGGTCCCTCTAAT-AGAACTCCCTTTGGTACTTTTGCCCC 289259 ||| || ||||| || || ||| ||| | | |||| || |||| ||| || || Sbjct 1659 CTTCCCCGTTCCTGGCGG-ACCTGAAATCATAGCTCCTTTCGGTATTTTGGCTCC 1606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471435581462946