Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq15862 96.9 4e-14 seq7864 96.9 4e-14 >seq15862 Length=13631 Score = 96.9 bits (106), Expect = 4e-14 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 1254438 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGAC 1254497 || |||||| |||| || |||| || ||||||||||| |||||||||| ||| | | Sbjct 12786 GCTTCGGTGGCGATTCGCTCGAAGATATCGTTGACAAATGAGTTCATGATAAGCATGGCC 12727 Query 1254498 TTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 |||||||| || || |||||| || ||||| ||||| |||||||||||| Sbjct 12726 TTGTTGGAAATTCCAGTGTCGGGATGGACCTGTTTGAGGACCTTGTAGATG 12676 >seq7864 Length=7112 Score = 96.9 bits (106), Expect = 4e-14 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 1254438 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGAC 1254497 || ||||| |||| || || | |||||||| || || |||||||||| | |||| | | Sbjct 3523 GCTTCGGTTGCGATCCGTTCAAAGATGTCGTTTACGAAAGAGTTCATGATCAACATGGCC 3464 Query 1254498 TTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||||||||| || ||||||||| ||||| ||||| ||||| |||||| Sbjct 3463 TTGTTGGAGATACCGGTGTCGGGGTGGACCTGTTTGAGGACCTTATAGATG 3413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105476733651786