Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq15862 89.7 8e-12 seq7864 89.7 8e-12 seq8938 87.8 3e-11 >seq15862 Length=13631 Score = 89.7 bits (98), Expect = 8e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 1485604 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGAT 1485663 || |||||| |||| || |||| || ||||||||||| ||||||||||| ||| | Sbjct 12786 GCTTCGGTGGCGATTCGCTCGAAGATATCGTTGACAAATGAGTTCATGATAAGCATGGCC 12727 Query 1485664 TTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 |||||||| || || |||||| || ||||| ||||| |||||||| Sbjct 12726 TTGTTGGAAATTCCAGTGTCGGGATGGACCTGTTTGAGGACCTTGTA 12680 >seq7864 Length=7112 Score = 89.7 bits (98), Expect = 8e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 1485604 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGAT 1485663 || ||||| |||| || || | |||||||| || || |||||||||||| |||| | Sbjct 3523 GCTTCGGTTGCGATCCGTTCAAAGATGTCGTTTACGAAAGAGTTCATGATCAACATGGCC 3464 Query 1485664 TTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 ||||||||||| || ||||||||| ||||| ||||| ||||| || Sbjct 3463 TTGTTGGAGATACCGGTGTCGGGGTGGACCTGTTTGAGGACCTTATA 3417 >seq8938 Length=53458 Score = 87.8 bits (96), Expect = 3e-11 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 2073565 TTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGACTCGCCGTTGGTGCCCGCCACGTAG 2073624 |||||||| || ||||| || |||| |||||||| | || ||||| || | | || Sbjct 23688 TTAAAGACTCGAAGCATAGGTACAATCCCGTTGGAGTATCCATTGGTCCCAGAGATATAA 23629 Query 2073625 GCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCGATGCCGCCGGCCGCCTTGGAGATG 2073684 ||| | ||| | | ||||| | | ||||| ||||| || ||||||||| Sbjct 23628 CTGCCAGTGGCTCTGATATTGTGGATGTGGAGTCCGATCCCGCCCGCACTCTTGGAGATC 23569 Query 2073685 AGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCGATCGAGTCGGCCTTCATGTCCAAC 2073744 | || || |||||| || |||||||| || |||||||| || | || || | | | Sbjct 23568 ATGGCACAAGTTTTCAAGGTATCGTAGATTCCGTCGATCGAATCAGATTTGCTGGCAACC 23509 Query 2073745 AGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCGGCATTGAAGAGCGTGGG 2073797 | ||||| || ||| ||| ||| | | || ||||||||||| || || || Sbjct 23508 AAGAAGCAAGATGAGAGTTGTGGGTGAGGGGTCCCGGCATTGAAAAGGGTCGG 23456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914091464143262