Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq4123 100 3e-16 seq10790 87.8 2e-12 >seq4123 Length=2531 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 |||||||| | || | ||| ||||||| ||||| ||||| || |||||||| ||| Sbjct 1601 CCTCCTCGGAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCA 1660 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | ||| || ||||||||||| ||| |||| | |||||| ||||| | || Sbjct 1661 AGGGTACGACCGTCCTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGTGGGG 1720 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 |||||||| ||||| || || ||| | | || | |||||| | | ||| ||| Sbjct 1721 ATGCCTTCCTTGTCTTGGATCTTGGCTTTGACATTATCAATCGTGTCCGACGATTCCACT 1780 Query 137365 TCAACAGTCACCGTCTTGCCGGT 137387 || | ||| | |||||| ||||| Sbjct 1781 TCCAGAGTGATCGTCTTACCGGT 1803 >seq10790 Length=2194 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || ||||| || || |||||||| ||| || || | ||||||||||| || || Sbjct 1772 GTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTACGGCCATCTTCGAGTTGCTTGCCG 1831 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || | || |||||||||||||| || || || ||||| ||||| |||||| ||| Sbjct 1832 GCGAAAATGAGACGTTGCTGATCAGGGGGGATACCTTCCTTGTCTTGAATTTTCGCTTTG 1891 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 137387 | | || | ||||| ||| ||| ||||||| || | ||||||||| || Sbjct 1892 ACGTTATCGATGGTGTCACTGGATTCAACTTCAAGGGTGATCGTCTTGCCTGT 1944 Score = 82.4 bits (90), Expect = 7e-11 Identities = 101/136 (74%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || ||||| | ||| | ||| | |||| || || || ||||| |||||||||||| | Sbjct 2038 CCACCTCGGAGACGGAGAACCAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGCC 2097 Query 137245 ATTGTGCTCGA--GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 | | | |||| ||||||||||| || || ||| |||| | ||| || ||||| |||| Sbjct 2098 A--GAGTTCGACCATCTTCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCGGAG 2155 Query 137303 GTATGCCTTCTTTGTC 137318 | || ||||| ||||| Sbjct 2156 GGATTCCTTCCTTGTC 2171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488420288445600