Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq10791 163 6e-35 seq4123 150 4e-31 seq10790 118 2e-21 seq10793 98.7 2e-15 >seq10791 Length=597 Score = 163 bits (180), Expect = 6e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||| | || ||||| || || || ||||| |||||||| || || || || | Sbjct 192 CCTCCTCGAAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCA 251 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||||||| | |||||| || ||||||||||| | |||||||||||| || Sbjct 252 AGGGTACGACCGTCTTCCAATTGTTTACCGGCAAAGATTAGACGTTGTTGATCTGGGGGG 311 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||||||||| ||||| ||||| || || |||||||| || | ||| ||| Sbjct 312 ATTCCTTCCTTATCTTGGATCTTAGCTTTGACGTTATCAATCGTGTCCGACGATTCCACT 371 Query 82764 TCCAAAGTTATCGTCTTGCCTGT 82786 |||| ||| |||||||| || || Sbjct 372 TCCAGAGTGATCGTCTTACCGGT 394 >seq4123 Length=2531 Score = 150 bits (166), Expect = 4e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||| | || ||||| || || || ||||| |||||||| || || || || | Sbjct 1601 CCTCCTCGGAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCA 1660 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||| || |||||||| || |||||||||| | ||||||||||| || Sbjct 1661 AGGGTACGACCGTCCTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGTGGGG 1720 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| ||||| ||||| ||||| ||||| |||||||| || | ||| ||| Sbjct 1721 ATGCCTTCCTTGTCTTGGATCTTGGCTTTGACATTATCAATCGTGTCCGACGATTCCACT 1780 Query 82764 TCCAAAGTTATCGTCTTGCCTGT 82786 |||| ||| |||||||| || || Sbjct 1781 TCCAGAGTGATCGTCTTACCGGT 1803 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||| | ||| || || || || || || || || ||||| || || || || | Sbjct 1309 CCTCCTCGGAGACGGAGGACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCG 1368 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||||||| ||||||||||| |||||||| || | |||||| |||||||| Sbjct 1369 AGGGTGCGACCGTCTTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGAGGA 1428 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| ||||| ||||| || || || || ||||| ||||| | || ||| Sbjct 1429 ATGCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTGTCAATAGTATCGGACGACTCAACT 1488 Query 82764 TCCAAAGTTATCGTCTTGCCTGT 82786 |||||||| || ||||| ||||| Sbjct 1489 TCCAAAGTGATGGTCTTTCCTGT 1511 Score = 134 bits (148), Expect = 3e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 ||||| || || || || || || || || || || ||||| | | | ||| ||| || Sbjct 1037 AGAACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCGGCCAAAGTTCGACCATCC 1096 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || ||||| ||||||||||||||||| | |||||||| || || ||||||||||||||| Sbjct 1097 TCAAGTTGCTTTCCAGCAAAGATTAGACGCTGTTGATCCGGTGGGATTCCTTCCTTATCT 1156 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || ||||| || || || || ||||| || || | ||| || |||||||| || || Sbjct 1157 TGGATCTTGGCCTTGACGTTGTCAATAGTGTCCGATGATTCGACCTCCAAAGTGATGGTT 1216 Query 82779 TTGCCTGTCAAC 82790 ||||| || ||| Sbjct 1217 TTGCCAGTTAAC 1228 Score = 131 bits (144), Expect = 3e-25 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| | ||| || |||||||| || ||||| || ||||| || || ||||||| Sbjct 1885 TACCACCTCGAAGACGGAGGACTAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAG 1944 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || ||| ||||| || ||||| || || |||||||| || | |||||||| || | Sbjct 1945 CAAGGGTTCGGCCGTCCTCAAGTTGCTTGCCGGCAAAGATAAGACGCTGTTGATCCGGGG 2004 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||||||||| ||||| || || ||||| || || ||||| | || | Sbjct 2005 GAATGCCCTCCTTATCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGGAGGACTCGA 2064 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGT 82786 |||| | || || ||||| ||||| Sbjct 2065 CTTCGAGGGTGATGGTCTTTCCTGT 2089 Score = 123 bits (136), Expect = 5e-23 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| ||||| || || |||| | ||| ||||| ||||| || | | | ||| Sbjct 736 ACGGAGAACCAAGTGAAGGGTTGATTTCTCCTGGATATTGTAATCGGACAAGGTACGACC 795 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| ||||| || || || || || || | ||| ||||| || || || || ||||| Sbjct 796 ATCTTCGAGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGTGGGATACCCTCCTT 855 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||| || || || || || || ||||| || ||| ||| ||| ||||| | || || Sbjct 856 GTCTTGGATTTTCGCCTTGACGTTATCAATAGTGTCACTAGATTCAACTTCGAGGGTGAT 915 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATAT 82804 |||||||||||| | |||| || | |||| Sbjct 916 CGTCTTGCCTGT--AAGTCTGTAAAGATAT 943 Score = 116 bits (128), Expect = 7e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| | || || || || ||||| || || || || || | ||| | | |||| Sbjct 2194 CGGAGAACCAGATGAAGGGTTGACTCTTTTTGGATGTTGTAGTCCGCAAGAGTGCGACCG 2253 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || ||||| ||||| ||||| || | | ||| || ||||| || || |||||||| Sbjct 2254 TCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGGGAATACCTTCCTTG 2313 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||||||||| || || || || ||||| || ||| | || |||||||| | ||| Sbjct 2314 TCTTGAATCTTCGCCTTGACGTTGTCAATGGTGTCAGAGGACTCGACTTCCAAGATGATC 2373 Query 82776 GTCTTGCCTGTCAA 82789 || ||||| ||||| Sbjct 2374 GTTTTGCCGGTCAA 2387 >seq10790 Length=2194 Score = 118 bits (130), Expect = 2e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||| | ||| ||||| | ||| ||||| || || || || || || ||||| | Sbjct 2038 CCACCTCGGAGACGGAGAACCAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGCC 2097 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| ||| ||| ||||| ||||| ||||| |||||||||| | |||||||| ||||| Sbjct 2098 AGAGTTCGACCATCTTCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCGGAGGG 2157 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATT 82738 ||||||||||| ||||| ||||| || || || || Sbjct 2158 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTT 2192 Score = 116 bits (128), Expect = 7e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || ||||| || || ||||| ||||| || || || || || | | | || Sbjct 1753 ACGGAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTACGGCC 1812 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| ||||| || || || || || || | ||| ||||| || || || |||||||| Sbjct 1813 ATCTTCGAGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGGGGGATACCTTCCTT 1872 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 |||||||| || ||||| || || || || || ||| | | ||| ||||| | || || Sbjct 1873 GTCTTGAATTTTCGCTTTGACGTTATCGATGGTGTCACTGGATTCAACTTCAAGGGTGAT 1932 Query 82775 CGTCTTGCCTGT 82786 |||||||||||| Sbjct 1933 CGTCTTGCCTGT 1944 >seq10793 Length=1593 Score = 98.7 bits (108), Expect = 2e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 |||| ||| || || ||||| || || || || | | | | |||||||| | || Sbjct 247 TGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCTTCCAACTGC 306 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| | || |||||||| || || || |||||||| ||||| |||||| Sbjct 307 TTACCAGCAAAGATCAATCGCTGTTGATCAGGGGGAATACCTTCCTTGTCTTGGATCTTT 366 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 || || || || ||||| || || || || || || | ||| || |||||||| || Sbjct 367 GCCTTGACGTTGTCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGTCTTGCCGGT 425 Score = 87.8 bits (96), Expect = 4e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| || ||||| || |||||||| || | |||||| ||||| || || || ||| Sbjct 5 CCATCTTCCAGCTGTTTACCGGCAAAGATAAGACGTTGTTGGTCTGGCGGGATGCCCTCC 64 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750 |||||||| ||||| || || || || |||||||| || Sbjct 65 TTATCTTGGATCTTGGCCTTGACGTTGTCAATCGTGTC 102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981572361227462