Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq10792 107 2e-18 seq10793 89.7 5e-13 seq4123 89.7 5e-13 seq10790 84.2 2e-11 >seq10792 Length=373 Score = 107 bits (118), Expect = 2e-18 Identities = 135/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| |||||||| || || ||||| || | | ||| ||| |||||| || | Sbjct 46 ATGAAGGGTCGACTCTTTTTGGATGTTGTAGTCCGCAAGGGTGCGACC-GTCCTCCAGTT 104 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || || |||| | || |||||||| || ||||| ||||||||||| ||||| Sbjct 105 GCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGGATCT 164 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | |||| ||||||| || ||| || || | ||||| |||||||||| Sbjct 165 TCGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGACTTCCAAGGTGATCGTTTTGCCGG 224 Query 133636 TCA 133638 ||| Sbjct 225 TCA 227 >seq10793 Length=1593 Score = 89.7 bits (98), Expect = 5e-13 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| ||| ||| ||| ||| || | |||||| || Sbjct 253 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCTTCCAACTGCTTACCA 312 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || | ||||| || || || || || ||||||||||| ||||||| |||| Sbjct 313 GCAAAGATCAATCGCTGTTGATCAGGGGGAATACCTTCCTTGTCTTGGATCTTTGCCTTG 372 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 | | |||| ||||||| | ||| || || | |||| ||| |||||||| ||| Sbjct 373 ACGTTGTCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGTCTTGCCGGTAAGA 429 >seq4123 Length=2531 Score = 89.7 bits (98), Expect = 5e-13 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| |||||||| || || ||||| || | | ||| ||| |||||| || | Sbjct 2205 ATGAAGGGTTGACTCTTTTTGGATGTTGTAGTCCGCAAGAGTGCGACC-GTCCTCCAGTT 2263 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || || |||| | || |||||||| || || || ||||||||||| |||| Sbjct 2264 GCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATCT 2323 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | |||| ||||| | || ||| || || | | ||| |||||||||| Sbjct 2324 TCGCCTTGACGTTGTCAATGGTGTCAGAGGACTCGACTTCCAAGATGATCGTTTTGCCGG 2383 Query 133636 TCA 133638 ||| Sbjct 2384 TCA 2386 >seq10790 Length=2194 Score = 84.2 bits (92), Expect = 2e-11 Identities = 134/187 (72%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | |||||| || ||||| || ||||| ||| || || | | | || ||||| Sbjct 1763 AAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTACGGCCA-TCTTCGAG 1821 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||||| ||| ||||||| || ||||| || || ||||| ||||||||||| ||| Sbjct 1822 TTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGGGGGATACCTTCCTTGTC-TTGAA 1880 Query 133574 CTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| || |||| | || | ||||| ||| || || || | ||||| || |||| Sbjct 1881 TTTTCGCTTTGACGTTATCGATGGTGTCACTGGATTCAACTTCAAGGGTGATCGTCTTGC 1940 Query 133633 CGGTCAG 133639 | || || Sbjct 1941 CTGTGAG 1947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483298385767920