Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq10791 114 3e-20 seq4123 100 7e-16 seq10790 98.7 2e-15 seq10793 95.1 3e-14 seq10792 86.0 1e-11 >seq10791 Length=597 Score = 114 bits (126), Expect = 3e-20 Identities = 148/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 206191 CTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAA 206249 ||||| || || ||||||||| ||||||||||| || ||||| | || || ||| Sbjct 397 CTCACCGGTAAGACGATCACTCTGGAAGTGGAATCGTCGGACACGATTGATAACGTCAAA 338 Query 206250 GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGG 206309 || || ||| ||||| || |||||||| || || ||| | || ||||| ||||| Sbjct 337 GCTAA-GATCCAAGATAAGGAAGGAATCCCCCCAGATCAACAACGTCTAATCTTTGCCGG 279 Query 206310 AAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCT 206369 || || |||||||| || | || | ||||| |||||| | |||||||||||||| || Sbjct 278 TAAACAATTGGAAGACGGTCGTACCCTTGCCGACTACAACATTCAGAAAGAGTCTACCCT 219 Query 206370 TCACCTTGTTTTGAGACTTCGA 206391 ||| | ||| | |||||||| Sbjct 218 TCATTTGGTTCTCCGACTTCGA 197 >seq4123 Length=2531 Score = 100 bits (110), Expect = 7e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 206181 TTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGA 206240 |||||| | | || || |||||||||| |||||||| || |||||||| | || Sbjct 2397 TTGCAACAGATTGACCGGCAAAACGATCATCTTGGAAGTCGAGTCCTCTGACACCATTGA 2338 Query 206241 ATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTAT 206300 || ||| ||||||||||| || ||||| ||| || ||| ||| | | || Sbjct 2337 CAACGTCAAGGCGAAGATTCAAGACAAGGAAGGTATTCCCCCAGACCAGCAACGTTTGAT 2278 Query 206301 CTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGA 206360 || ||||||||||| |||| || || | ||| | || || |||||| |||| ||||| Sbjct 2277 TTTTGCCGGAAAGCAACTGGAGGACGGTCGCACTCTTGCGGACTACAACATCCAAAAAGA 2218 Query 206361 GTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| || ||||| || ||| | |||| || Sbjct 2217 GTCAACCCTTCATCTGGTTCTCCGACTCCG 2188 Score = 98.7 bits (108), Expect = 2e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || ||||| ||||||||||| || ||| || ||||| | || || ||| Sbjct 1224 ACTGGCAAAACCATCACTTTGGAGGTCGAATCATCGGACACTATTGACAACGTCAAGGCC 1165 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || |||||||| ||||| || | || ||||| || |||||| Sbjct 1164 AAGATCCAAGATAAGGAAGGAATCCCACCGGATCAACAGCGTCTAATCTTTGCTGGAAAG 1105 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 || | || ||||| | |||||||||||||||||| | || || ||||| || ||||| Sbjct 1104 CAACTTGAGGATGGTCGAACTTTGGCCGATTACAACATTCAAAAGGAGTCCACCCTTCA 1046 Score = 89.7 bits (98), Expect = 1e-12 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 206191 CTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAG 206250 ||||||||||| || |||||||||||||| || || || || | || || ||| Sbjct 1514 CTCACAGGAAAGACCATCACTTTGGAAGTTGAGTCGTCCGATACTATTGACAACGTCAAG 1455 Query 206251 CAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGA 206310 ||||| ||||| || || || ||| || ||| ||| | || ||||| |||||| Sbjct 1454 GCTAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAACAACGTCTCATCTTTGCCGGA 1395 Query 206311 AAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTT 206370 || || | ||||| || | || | ||||| |||||| ||||||| ||||| || || Sbjct 1394 AAACAACTTGAAGACGGTCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCCACACTC 1335 Query 206371 CA 206372 || Sbjct 1334 CA 1333 Score = 87.8 bits (96), Expect = 4e-12 Identities = 146/206 (71%), Gaps = 10/206 (5%) Strand=Plus/Minus Query 206191 CTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAA 206249 ||||| || || ||||||||| ||||||||||| || ||||| | || || ||| Sbjct 1806 CTCACCGGTAAGACGATCACTCTGGAAGTGGAATCGTCGGACACGATTGATAATGTCAAA 1747 Query 206250 GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGAC-GCTCAAAGACTT---ATCTTCG 206305 || || ||| ||||| || ||||| || || || | |||| || | ||||| | Sbjct 1746 GCCAA-GATCCAAGACAAGGAAGGCAT----CCCCACAGATCAACAACGTTTAATCTTTG 1692 Query 206306 CCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTA 206365 |||| || || |||| || || | || | ||||| |||||| | ||||||||||||| Sbjct 1691 CCGGTAAACAACTGGAGGACGGTCGTACCCTTGCCGACTACAACATTCAGAAAGAGTCTA 1632 Query 206366 CTCTTCACCTTGTTTTGAGACTTCGA 206391 | ||||| | ||| | |||| ||| Sbjct 1631 CCCTTCATTTGGTTCTCCGACTCCGA 1606 >seq10790 Length=2194 Score = 98.7 bits (108), Expect = 2e-15 Identities = 101/129 (78%), Gaps = 6/129 (5%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA-AGACTT--ATCTTCGCCGGA 206310 ||||| ||||| || |||||||| ||||| |||| || || ||||| |||||| Sbjct 2180 AAGATCCAAGACAAGGAAGGAATCCCTCCGGA---TCAACAGCGTTTAATCTTTGCCGGA 2124 Query 206311 AAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTT 206370 ||||| | |||||||| | ||| |||||||||||||| |||| || ||||| |||||| Sbjct 2123 AAGCAACTCGAAGATGGTCGAACTCTGGCCGATTACAACATCCAAAAGGAGTCCACTCTT 2064 Query 206371 CACCTTGTT 206379 ||||| ||| Sbjct 2063 CACCTGGTT 2055 >seq10793 Length=1593 Score = 95.1 bits (104), Expect = 3e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 206191 CTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAG 206250 || || || || || |||||| | || || || ||| ||||| | || || ||| Sbjct 428 CTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCTTCCGACACCATTGACAACGTCAAG 369 Query 206251 CAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGA 206310 |||||| ||||| || ||||| ||| || || || || | ||||| || || Sbjct 368 GCAAAGATCCAAGACAAGGAAGGTATTCCCCCTGATCAACAGCGATTGATCTTTGCTGGT 309 Query 206311 AAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTT 206370 |||||||||||||| || | || |||||||| |||||| ||||||| ||||| ||| | Sbjct 308 AAGCAGTTGGAAGACGGCCGCACCTTGGCCGACTACAACATCCAGAAGGAGTCCACTTTG 249 Query 206371 CACCTTGTTTTGAGACTTCG 206390 || || || || | ||||| Sbjct 248 CATCTCGTGTTACGTCTTCG 229 >seq10792 Length=373 Score = 86.0 bits (94), Expect = 1e-11 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 206181 TTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGA 206240 |||||| | | || || ||||||||||| |||||||| || || ||||| | || Sbjct 238 TTGCAACAGATTGACCGGCAAAACGATCACCTTGGAAGTCGAGTCCTCCGACACCATTGA 179 Query 206241 ATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTAT 206300 || ||| ||||| ||||| || ||||| || || ||| ||| | | || Sbjct 178 CAACGTCAAGGCGAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAGCAACGTTTGAT 119 Query 206301 CTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGA 206360 || ||||||||||| |||| || || | || | || || |||||| |||| ||||| Sbjct 118 TTTTGCCGGAAAGCAACTGGAGGACGGTCGCACCCTTGCGGACTACAACATCCAAAAAGA 59 Query 206361 GTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| || ||||| || ||| | |||| || Sbjct 58 GTCGACCCTTCATCTGGTTCTCCGACTCCG 29 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181514051763618