Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq4123 136 4e-27 seq10793 125 7e-24 seq10791 122 9e-23 seq10792 118 1e-21 seq10790 96.9 4e-15 >seq4123 Length=2531 Score = 136 bits (150), Expect = 4e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||||| |||||| | || | || || || || || || ||||||||||||||| Sbjct 1599 TTCCTCCTCGGAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGG 1658 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 ||| ||| || ||| || || ||||| || ||||| || ||||| || ||||| | | Sbjct 1659 CAAGGGTACGACCGTCCTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGTGG 1718 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | |||||||| || ||||| || || |||||| || | ||||| |||||||||| Sbjct 1719 GGATGCCTTCCTTGTCTTGGATCTTGGCTTTGACATTATCAATCGTGTCCGACGATTCCA 1778 Query 134665 CGTCGAGAGTAATGGTTTTACCGGT 134689 | || ||||| || || |||||||| Sbjct 1779 CTTCCAGAGTGATCGTCTTACCGGT 1803 Score = 109 bits (120), Expect = 6e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||||| ||| || | || | || || ||||| ||||| || |||||||||||| Sbjct 1307 TTCCTCCTCGGAGACGGAGGACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGG 1366 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | | |||| || ||| || || ||||| || ||||| || | ||| || || || || | Sbjct 1367 CGAGGGTGCGACCGTCTTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGAG 1426 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | ||||| || || ||||| || || ||||| ||| | || |||||||| || | Sbjct 1427 GAATGCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTGTCAATAGTATCGGACGACTCAA 1486 Query 134665 CGTCGAGAGTAATGGTTTTACCGGT 134689 | || | ||| ||||| || || || Sbjct 1487 CTTCCAAAGTGATGGTCTTTCCTGT 1511 Score = 109 bits (120), Expect = 6e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || | |||||| | || || || || || || || ||||| ||||||||||| Sbjct 2180 TTCCACCACGGAGTCGGAGAACCAGATGAAGGGTTGACTCTTTTTGGATGTTGTAGTCCG 2239 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 ||| ||| || ||| || || || || || |||||||||||||| ||||| || || | Sbjct 2240 CAAGAGTGCGACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGG 2299 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || |||||||| || ||||| ||| | ||||| || || || | Sbjct 2300 GAATACCTTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCAATGGTGTCAGAGGACTCGA 2359 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAA 134692 | || | | || ||||| ||||| || Sbjct 2360 CTTCCAAGATGATCGTTTTGCCGGTCAA 2387 Score = 105 bits (116), Expect = 7e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| |||| ||| | | || | || || ||||| ||||||||||||||||| ||| Sbjct 1020 TTCCACCTCGGAGATGGAGAACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCGG 1079 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | | || || || || || || || || ||||| || | |||||| ||||| || | Sbjct 1080 CCAAAGTTCGACCATCCTCAAGTTGCTTTCCAGCAAAGATTAGACGCTGTTGATCCGGTG 1139 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || ||||| || || ||||| ||| | ||||| || ||||| | Sbjct 1140 GGATTCCTTCCTTATCTTGGATCTTGGCCTTGACGTTGTCAATAGTGTCCGATGATTCGA 1199 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAA 134692 | || | ||| |||||||| || ||||| Sbjct 1200 CCTCCAAAGTGATGGTTTTGCCAGTTAA 1227 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| || || | || | ||| || || || ||||| ||||||||||| || || Sbjct 1887 CCACCTCGAAGACGGAGGACTAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCA 1946 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || || || ||||| ||||| || | |||||| ||||| || || Sbjct 1947 AGGGTTCGGCCGTCCTCAAGTTGCTTGCCGGCAAAGATAAGACGCTGTTGATCCGGGGGA 2006 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || ||||| || || ||||| ||| | || ||||| || || || Sbjct 2007 ATGCCCTCCTTATCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGGAGGACTCGACT 2066 Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689 ||||| || ||||| || || || Sbjct 2067 TCGAGGGTGATGGTCTTTCCTGT 2089 >seq10793 Length=1593 Score = 125 bits (138), Expect = 7e-24 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || |||||||| || | ||||| ||||| || |||||||||||| | | |||| | Sbjct 232 AGACGTAACACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGG 291 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || | ||| || || ||||| ||||| ||||| ||||| || || || ||||| Sbjct 292 CCGTCTTCCAACTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGGGGAATACCTTCC 351 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| || ||| ||||| ||| | |||||||| || || || || ||||| Sbjct 352 TTGTCTTGGATCTTTGCCTTGACGTTGTCAATGGTGTCGGAAGACTCGACCTCAAGAGTG 411 Query 134676 ATGGTTTTACCGGT 134689 ||||| || ||||| Sbjct 412 ATGGTCTTGCCGGT 425 Score = 86.0 bits (94), Expect = 6e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 134583 ATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCG 134642 |||||||| || || || || || || || || || ||||||||||| ||||| | Sbjct 685 ATCAAACGTTGTTGGTCTGGAGGGATACCCTCCTTGTCTTGAATTTTAGCCTTGACGTTG 744 Query 134643 TCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || | ||||||||||| || || |||||||| |||||||||||||| Sbjct 745 TCGATGGTGTCGGACGACTCAACTTCGAGAGTGATGGTTTTACCGGT 791 >seq10791 Length=597 Score = 122 bits (134), Expect = 9e-23 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||||| ||||| | || | || || || || || || ||||||||||||||| Sbjct 190 TTCCTCCTCGAAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGG 249 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 ||| ||| || ||| || | ||||| || ||||| || | ||| || ||||| || | Sbjct 250 CAAGGGTACGACCGTCTTCCAATTGTTTACCGGCAAAGATTAGACGTTGTTGATCTGGGG 309 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || ||||| || || |||||| || | ||||| |||||||||| Sbjct 310 GGATTCCTTCCTTATCTTGGATCTTAGCTTTGACGTTATCAATCGTGTCCGACGATTCCA 369 Query 134665 CGTCGAGAGTAATGGTTTTACCGGT 134689 | || ||||| || || |||||||| Sbjct 370 CTTCCAGAGTGATCGTCTTACCGGT 394 >seq10792 Length=373 Score = 118 bits (130), Expect = 1e-21 Identities = 151/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || | |||||| | || || || || || || || ||||| ||||||||||| Sbjct 21 TTCCACCACGGAGTCGGAGAACCAGATGAAGGGTCGACTCTTTTTGGATGTTGTAGTCCG 80 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 ||| |||| || ||| || || || || || |||||||||||||| ||||| || || | Sbjct 81 CAAGGGTGCGACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGG 140 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || ||||| || || ||||| ||| | |||||||| || || | Sbjct 141 GGATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGA 200 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAA 134692 | || | || || ||||| ||||| || Sbjct 201 CTTCCAAGGTGATCGTTTTGCCGGTCAA 228 >seq10790 Length=2194 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || | ||| || ||||||||||| || |||||||||||| Sbjct 1742 CCACCACGGAGACGGAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 1801 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || ||||| || ||||| || ||||| | ||| |||||||| || || Sbjct 1802 AAGGTACGGCCATCTTCGAGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGGGGG 1861 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || ||||||||||| |||||| || | ||||| ||||| || Sbjct 1862 ATACCTTCCTTGTCTTGAATTTTCGCTTTGACGTTATCGATGGTGTCACTGGATTCAACT 1921 Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689 || || || || || || || || Sbjct 1922 TCAAGGGTGATCGTCTTGCCTGT 1944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505270420490160