Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq19 84.2 3e-11 >seq19 Length=17389 Score = 84.2 bits (92), Expect = 3e-11 Identities = 146/212 (69%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 39938 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCC 39997 || || || ||||| ||||||| ||||||| ||||| || ||| || ||| || || Sbjct 11936 ATTTGGAAGCCGTAGAAACATCGAGCTTCAGCGATTTGAACTTCTCCACTAAACCTCTCG 11877 Query 39998 GCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATA 40057 | || || || || || ||||| || ||||| || || | |||||||| || Sbjct 11876 ATGAGGTTCTCGTTGACGATCCCATCGGAGGCAGCAAAGAAAGCGAGGACATGTTTGATG 11817 Query 40058 AAATATTTTTCATCGGGTGTCAATTTATT---CCAGTCATTGATATCTTTTGATATATCT 40114 || | ||| || || |||| ||||| |||||| | ||||| || || | ||| Sbjct 11816 AAGTGTTTCTCGTCCCCATTCAACTTATTATCCCAGTCGTGCATATCCTTCGACAGATCG 11757 Query 40115 ACTTCTTCAGCTGTCCAAAACGACGCCTCTGC 40146 | ||| || ||||||||||| || || || || Sbjct 11756 ATTTCCTCGGCTGTCCAAAAGGAAGCTTCGGC 11725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686734857519120