Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq6098 161 8e-35 >seq6098 Length=15141 Score = 161 bits (178), Expect = 8e-35 Identities = 273/393 (69%), Gaps = 12/393 (3%) Strand=Plus/Minus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 ||||| || ||||| || |||||||| || ||||||| ||| || ||||||| | || Sbjct 7338 CCCAAGATCGTAAACGGACCTGAAATTTTGAATAAATTTGTTGGAGAATCGGAGAAGAAC 7279 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548 | ||| |||||||| || || |||| |||| | ||| | |||| | || || Sbjct 7278 ATCCGAGAATTGTTTGCAGAAGCGGAAGTAGAATATAAA-GCCAAGGGAGATGAA--TCA 7222 Query 19549 ---TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC---- 19601 || ||||| || || | || || ||||| || || |||||||| |||||||| Sbjct 7221 GGATTACACATCATTATCTTTGACGAGTTGGATGCGATTTGTAAGCAGAGAGGTTCGACT 7162 Query 19602 --TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGT 19659 ||||| | ||| || || | || ||||||||||| |||| ||| | |||||| Sbjct 7161 GGTGGTGGGACTGGTGTCGGAGATTCGGTCGTCAATCAACTGTTGTCGAAAATGGACGGT 7102 Query 19660 GTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGAC 19719 || | ||| |||||||||| | | || || ||||| ||| || |||| | || || Sbjct 7101 GTCGATCAATTGAATAATATCCTGATCATCGGAATGACAAATCGATTGGACATGATTGAT 7042 Query 19720 AGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAA 19779 |||||| | ||||| ||||| ||||| | | || ||||| ||||| ||||| Sbjct 7041 GAGGCCTTACTTCGACCAGGTCGACTGGAAGTCCACATGGAAATCTCTTTACCAGATGAG 6982 Query 19780 TGTGGACGTGTGGAAATTTTAAACATACATACA 19812 |||| || | ||||||| ||||| |||||| Sbjct 6981 AGTGGTCGACTACAAATTTTGAACATTCATACA 6949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397357870349290