Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq4577 178 4e-39 seq10791 161 3e-34 seq4123 145 2e-29 seq10790 125 2e-23 seq10792 114 4e-20 seq3175 114 4e-20 seq10793 111 5e-19 seq3780 107 6e-18 seq11208 93.3 1e-13 >seq4577 Length=12330 Score = 178 bits (196), Expect = 4e-39 Identities = 267/374 (71%), Gaps = 4/374 (1%) Strand=Plus/Plus Query 67896 TGAAATTAAAGTTGCACAATTTAGTGGTTATGTTTCAGAACATTCAGGCTATCATCACGG 67955 |||||||||||| |||||||| | || ||| |||||||||||||| ||||||||| || Sbjct 11400 TGAAATTAAAGTAGCACAATTAGGAGGATATTGTTCAGAACATTCAGCCTATCATCATGG 11459 Query 67956 TGAAGCTAGTTTAAATTCATCAATTGTAGGTTTAGCTCAGAATTTTGTTGGATCAAATAA 68015 ||||| ||| | | | | | || || || |||||||| |||||||| ||| ||||| Sbjct 11460 AGAAGCAAGTCTCACTCAAACTATAGTCGGATTAGCTCAAAATTTTGTCGGAAGTAATAA 11519 Query 68016 TATTAATTTACTAGAACCAAAAGGTCAATTTGGAACTAGATTACT-TGGAGGAAAAGATG 68074 ||||||| | || ||| || || ||||| || ||| | | || ||| || ||||||| Sbjct 11520 TATTAATGTCCTCTCACCTAATGGCCAATTCGGTACTCG-TGCCTCTGGTGGTAAAGATG 11578 Query 68075 CTGCATCTGAAAGATATATATTTACACATCTAAATACTTTAACTAGACTTATCTTTAGAC 68134 | || |||| ||| ||||| || || || || | | | |||||| | || || | Sbjct 11579 CAGCTTCTGCAAGGTATATTTTCACTAATGTAGAAAAGATTACTAGAGTGATTTTCCCAG 11638 Query 68135 AAGAAGATGATAATATTCTTGAA-TATTTAGAAGATGATGGTGATAAAGTTGAGCCAATC 68193 | ||||||||| |||| || |||||| ||||||||| || | ||||| Sbjct 11639 CATCAGATGATAA-CGTCTTAAACTATTTAACGGATGATGGTACACAAATCGAGCCGGAA 11697 Query 68194 TATTATGTTCCTATTATTCCTATGATTTTAGTAAATGGTTCAAAAGGGATTGGCACTGGA 68253 | ||| | || || | || ||| | |||| ||||| || | |||||||| |||||| Sbjct 11698 TGGTATATCCCAATCTTACCGATGGTACTAGTGAATGGATCTAGTGGGATTGGAACTGGA 11757 Query 68254 TTTAGTACAGATAT 68267 | ||| ||||||| Sbjct 11758 TGGAGTTCAGATAT 11771 >seq10791 Length=597 Score = 161 bits (178), Expect = 3e-34 Identities = 164/214 (77%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| || || || | || ||||| | |||||| ||||||||||| ||||| || | Sbjct 184 TTTGCATTCCTCCTCGAAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGT 243 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | || || || ||||| | |||||| || ||||||||||||||||| |||| Sbjct 244 AGTCGGCAAGGGTACGACCGTCTTCCAATTGTTTACCGGCAAAGATTAGACGTTGTTGAT 303 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || |||||||| ||||| || || |||||||| || |||||||||| || || | Sbjct 304 CTGGGGGGATTCCTTCCTTATCTTGGATCTTAGCTTTGACGTTATCAATCGTGTCCGACG 363 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 ||| ||||| || || | ||||| ||||| || Sbjct 364 ATTCCACTTCCAGAGTGATCGTCTTACCGGTGAG 397 Score = 91.5 bits (100), Expect = 4e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||||||||| || | | || || |||||||| || ||||| || ||||| || | Sbjct 470 TTTGCATACCACCTCGGAGACGGAGGACTAGATGAAGGGTGGACTCCTTCTGAATGTTGT 529 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||||| | ||||| || ||||| ||||| || ||||||||||| || || || || | Sbjct 530 AATCAGCAAGAGTTCGGCCGTCTTCGAGTTGCTTGCCAGCAAAGATAAGGCGCTGTTGGT 589 Query 140623 CAGGAGGA 140630 | || ||| Sbjct 590 CCGGGGGA 597 >seq4123 Length=2531 Score = 145 bits (160), Expect = 2e-29 Identities = 137/174 (79%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||| | |||||| || ||||| |||||||| || ||||| | || ||||| ||||| Sbjct 1037 AGAACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCGGCCAAAGTTCGACCATCC 1096 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 |||||||| |||||||||||||||||||| || ||||| || || |||||||| ||||| Sbjct 1097 TCAAGTTGCTTTCCAGCAAAGATTAGACGCTGTTGATCCGGTGGGATTCCTTCCTTATCT 1156 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTC--AAGTG 140697 || || || || || || || ||||| | || |||| ||| || || ||||| Sbjct 1157 TGGATCTTGGCCTTGACGTTGTCAATAGTGTCCGATGATTCGACCTCCAAAGTG 1210 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 || || || || | || ||||| | |||||| ||||||||||| ||||| || || || Sbjct 1598 ATTCCTCCTCGGAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCG 1657 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 | | || || || || || |||||||| || |||||||||| |||||| ||||| | Sbjct 1658 GCAAGGGTACGACCGTCCTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGTG 1717 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 || || ||||| || || || || || ||||| ||||||||||||| || || | ||| Sbjct 1718 GGGATGCCTTCCTTGTCTTGGATCTTGGCTTTGACATTATCAATCGTGTCCGACGATTCC 1777 Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 ||||| || || | ||||| ||||| || Sbjct 1778 ACTTCCAGAGTGATCGTCTTACCGGTGAG 1806 Score = 127 bits (140), Expect = 6e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| |||||||| | || ||||| |||||||| || ||||||||||| || || | Sbjct 2174 TTTGCATTCCACCACGGAGTCGGAGAACCAGATGAAGGGTTGACTCTTTTTGGATGTTGT 2233 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | || || || || || ||||| ||||| ||||| || | ||||||||| | Sbjct 2234 AGTCCGCAAGAGTGCGACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGT 2293 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| ||||| || || ||||| || || || || || ||||| | ||||| | Sbjct 2294 CTGGGGGAATACCTTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCAATGGTGTCAGAGG 2353 Query 140683 GTTCAACTTC 140692 || ||||| Sbjct 2354 ACTCGACTTC 2363 Score = 123 bits (136), Expect = 8e-23 Identities = 152/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | ||||| | ||||| || || | | || ||||| ||||| || Sbjct 724 ACCACCACGGAGACGGAGAACCAAGTGAAGGGTTGATTTCTCCTGGATATTGTAATCGGA 783 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 || || || |||||||| ||||| || || || || || ||||||||||||||||| || Sbjct 784 CAAGGTACGACCATCTTCGAGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGTGG 843 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || || || || || || ||||| || || || |||||||| | ||| | |||||| Sbjct 844 GATACCCTCCTTGTCTTGGATTTTCGCCTTGACGTTATCAATAGTGTCACTAGATTCAAC 903 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 ||| || || | ||||| || || ||| Sbjct 904 TTCGAGGGTGATCGTCTTGCCTGTAAGT 931 Score = 120 bits (132), Expect = 9e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || | ||| || || ||||| || || || || || || | | || || || ||| Sbjct 1324 AGGACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCT 1383 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 |||||||||||||| |||||||| |||||||| || || |||||||| || || || || Sbjct 1384 TCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGAGGAATGCCCTCCTTGTCT 1443 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || ||||| || || || ||||| | ||| || | |||||||| | || | ||| Sbjct 1444 TGGATCTTAGCCTTGACGTTGTCAATAGTATCGGACGACTCAACTTCCAAAGTGATGGTC 1503 Query 140706 TTTCCGGTTAG 140716 ||||| || || Sbjct 1504 TTTCCTGTGAG 1514 >seq10790 Length=2194 Score = 125 bits (138), Expect = 2e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || | || || || || || || || || || || || || Sbjct 1741 ACCACCACGGAGACGGAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 1800 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 || || || |||||||| ||||| || || || || || ||||||||||||||||| || Sbjct 1801 CAAGGTACGGCCATCTTCGAGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGGGG 1860 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || ||||| || || |||||||| ||||| || ||||| || | ||| | |||||| Sbjct 1861 GATACCTTCCTTGTCTTGAATTTTCGCTTTGACGTTATCGATGGTGTCACTGGATTCAAC 1920 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAG 140716 |||||| || | ||||| || || || Sbjct 1921 TTCAAGGGTGATCGTCTTGCCTGTGAG 1947 >seq10792 Length=373 Score = 114 bits (126), Expect = 4e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| |||||||| | || ||||| |||||||| || ||||||||||| || || | Sbjct 15 TTTGCATTCCACCACGGAGTCGGAGAACCAGATGAAGGGTCGACTCTTTTTGGATGTTGT 74 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | || || || || || ||||| ||||| ||||| || | ||||||||| | Sbjct 75 AGTCCGCAAGGGTGCGACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGT 134 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || ||||| || || || || || || || || || ||||| | || || | Sbjct 135 CTGGGGGGATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCAATGGTGTCGGAGG 194 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 || ||||| | || | || || ||||| Sbjct 195 ACTCGACTTCCAAGGTGATCGTTTTGCCGGT 225 >seq3175 Length=13629 Score = 114 bits (126), Expect = 4e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264 || || ||| | ||||| || || || || |||| ||| |||||||||||||| || || Sbjct 4180 GGTATTGATCTCGGTACCACCTACTCCTGCGTTGGTGTATGGCAAAATGATCGAGTTGAG 4239 Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || ||||| || || ||||| || ||||||| || || |||||||| || ||||| | Sbjct 4240 ATCATTGCCAACGACCAAGGAAATCGAACAACTCCTTCCTACGTTGCTTTCACCGACTCA 4299 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 || ||| |||| |||||| | || || || |||| || || || | | || || Sbjct 4300 GAACGTCTGATCGGTGATGCCGCCAAGAACCAAGTCGCCATGAACCCTCACCACACCGTC 4359 Query 349385 TTTGATGCTAAGCGACTTATTGG 349407 || ||||| ||||| || || || Sbjct 4360 TTCGATGCCAAGCGTCTGATAGG 4382 >seq10793 Length=1593 Score = 111 bits (122), Expect = 5e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || ||||| | ||| ||||| || || || || | Sbjct 215 TTTGCATACCACCACGAAGACGTAACACGAGATGCAAAGTGGACTCCTTCTGGATGTTGT 274 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | || || || || ||||| | || || ||||||||||| | || || |||| Sbjct 275 AGTCGGCCAAGGTGCGGCCGTCTTCCAACTGCTTACCAGCAAAGATCAATCGCTGTTGAT 334 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| ||||| ||||| || || || || || || || || || ||||| | || || | Sbjct 335 CAGGGGGAATACCTTCCTTGTCTTGGATCTTTGCCTTGACGTTGTCAATGGTGTCGGAAG 394 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 || || ||||| || | ||||| ||||| || Sbjct 395 ACTCGACCTCAAGAGTGATGGTCTTGCCGGTAAG 428 >seq3780 Length=22543 Score = 107 bits (118), Expect = 6e-18 Identities = 180/260 (69%), Gaps = 3/260 (1%) Strand=Plus/Plus Query 349634 TTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTT 349693 || || || || |||||| || || || ||||| || | ||||| || | || || Sbjct 20039 TTCAACGACGCTCAGCGTCAAGCTACCAAGGATGCCGGTACGATTGCCGGACTTAACGTA 20098 Query 349694 CTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGT 349753 || |||| | || ||||| ||||| ||||| ||||| || || || |||| || || Sbjct 20099 CTCCGAATTGTCAACGAACCAACTGCCGCAGCGATTGCCTACGGACTGGATAGAACGAAG 20158 Query 349754 GACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTA 349813 | ||| | | || || | | ||| |||| ||||| ||||| ||||| |||||| Sbjct 20159 GG---AGAGCACCAAATCATTGTATACGATCTAGGAGGTGGAACTTTCGATGTCTCACTA 20215 Query 349814 CTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGT 349873 ||| | | || ||||| | ||||| || || || |||||||| || || | || Sbjct 20216 CTATCGATCGATGAGGGTGTCTTTGAGGTCTTGGCTACCGCTGGTGACACTCACTTGGGA 20275 Query 349874 GGAGAAGATTTTGATAATCG 349893 ||||||||||| ||||| || Sbjct 20276 GGAGAAGATTTCGATAACCG 20295 >seq11208 Length=11502 Score = 93.3 bits (102), Expect = 1e-13 Identities = 222/330 (67%), Gaps = 12/330 (4%) Strand=Plus/Plus Query 378183 ATCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGT 378242 ||||||| | ||||| | |||||| | || || | || || || || ||||| || Sbjct 4115 ATCATATGTGACCATGACATCTTCAAGAGCCTTCAAGAGACGACGCTGGATGTAACCGGT 4174 Query 378243 TTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAA 378302 | || || |||||||||||||| ||||| | ||||| |||| || ||||| || Sbjct 4175 CTCGGCGGTCTTGACTGCAGTATCAATCAAACCCTCTCGACCTGCCATAGCGTGGAAAAA 4234 Query 378303 TAATTC-AGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTG 378361 || || || || |||| || | | | ||| | || | ||||| | | | | Sbjct 4235 GAACTCTTGTGGGGTTAAG-CCTCGTAAGTACGAATTTTCGACGAATCCCCGAGATTCGG 4293 Query 378362 GCGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTC 378421 |||||| ||||| || || |||| || | || |||| || || || || ||||| | Sbjct 4294 GCGAATAATCATCCTTAGTGAAATGGGGCAGAGTTCGATACTTGAAGCCGTAGGGAATAC 4353 Query 378422 GTTTTCCATCAACATTCTGTTGACCAA---GTGCAGAAACCATTTGAGCAATATT--TAA 378476 |||| || || ||| ||||||||||| ||| || ||| |||| || || | | Sbjct 4354 GTTTCCCTTCCACAGACTGTTGACCAACGCATGCCGA---CATCTGAGAGATGTTGATGA 4410 Query 378477 ATCACTACCTTTAGACCCAGCATTAACCAT 378506 || | ||||||||| ||||| | ||||| Sbjct 4411 ATGA--ACCTTTAGAACCAGCTGTGACCAT 4438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514861107197174