Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq8938 91.5 2e-13 >seq8938 Length=53458 Score = 91.5 bits (100), Expect = 2e-13 Identities = 215/321 (67%), Gaps = 8/321 (2%) Strand=Plus/Plus Query 19844 AAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATCATG 19903 || || |||||||||||| | || | ||||| || |||||||| ||||| || || || Sbjct 24294 AAATCCAATCAGAAGAACCTTGGAACCATCAAATCATCCAACCTCTGTACCGAGATTATC 24353 Query 19904 GAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCCCTGTGCCTG-CCGAC 19962 || ||| || ||||| || || |||||| |||| || | ||||| || || Sbjct 24354 GAATACTCCGCCCCTGACGAAGTCGCAGTTTGTAATTTGGCCTCGAT-TGCCTTACCAAC 24412 Query 19963 TT---TCGTCAAGGCCTCCTCCTTCGACTTTGCCAAATTGTACGAGGTGACCCGGGTCGT 20019 || ||||| | | | | | ||||| |||| | | ||||| ||| || || Sbjct 24413 TTATATCGTCGATGGCAAATAC---GACTTCCACAAACTTCATGAGGTCACCAAGGAAGT 24469 Query 20020 CACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTACCCGACCGAGGCGGCGCGCAA 20079 ||| ||||||||||| | ||||| || | ||||||| | | |||| | || Sbjct 24470 CACCTACAATCTGAATCGAATTATCGACATCAATTACTACCCGATCCCAGAGGCGAGGAA 24529 Query 20080 GTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCAT 20139 |||||| ||| | || || ||||| | ||||| || || || || || |||| |||| Sbjct 24530 GTCGAACATGAGACATCGTCCGATTGGTATCGGAGTACAAGGACTTGCTGACGCTTTCCA 24589 Query 20140 GATGCTCGGCCTCTCATTCGA 20160 || ||| || ||||||| Sbjct 24590 AATCCTCAAGCTACCATTCGA 24610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548385899807520