Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq4123 159 3e-34 seq10791 156 4e-33 seq10793 131 1e-25 seq10790 114 1e-20 >seq4123 Length=2531 Score = 159 bits (176), Expect = 3e-34 Identities = 165/215 (77%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 27009 CTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAA 27068 || ||||| ||| | || ||||| ||||||||| |||| ||| ||||||| | |||||| Sbjct 1806 CTCACCGGTAAGACGATCACTCTGGAAGTGGAATCGTCGGACACGATTGATAATGTCAAA 1747 Query 27069 CAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGC 27128 || || |||||||| |||||||| || | |||||||| |||||||| | ||||| Sbjct 1746 GCCAAGATCCAAGACAAGGAAGGCATCCCCACAGATCAACAACGTTTAATCTTTGCCGGT 1687 Query 27129 AAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTA 27188 |||||| |||| ||| || ||| || |||| ||||||||||| || ||||| ||| | Sbjct 1686 AAACAACTGGAGGACGGTCGTACCCTTGCCGACTACAACATTCAGAAAGAGTCTACCCTT 1627 Query 27189 CATTTGGTTTTGCGTTTGCGGGGTGGCATAACAAA 27223 ||||||||| | || | || || || || ||||| Sbjct 1626 CATTTGGTTCTCCGACTCCGAGGAGGAAT-ACAAA 1593 Score = 118 bits (130), Expect = 9e-22 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071 || ||||| | || ||| | || || ||| | || ||| | ||||| | ||||| Sbjct 1224 ACTGGCAAAACCATCACTTTGGAGGTCGAATCATCGGACACTATTGACAACGTCAAGGCC 1165 Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || || ||||| || ||||| || ||||| |||||||||||| |||| | || || || Sbjct 1164 AAGATCCAAGATAAGGAAGGAATCCCACCGGATCAACAGCGTCTAATCTTTGCTGGAAAG 1105 Query 27132 CAATTGGAAGACAGTTCGACCGTTT-CCGATTACAACATTCAAAAGGAGTCGACCTTACA 27190 ||| | || || || ||| | || ||||||||||||||||||||||||| ||| | || Sbjct 1104 CAACTTGAGGATGGT-CGAACTTTGGCCGATTACAACATTCAAAAGGAGTCCACCCTTCA 1046 Query 27191 TTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||| | | | | || ||||| || Sbjct 1045 TTTGGTTCTCCATCTCCGAGGTGGAAT 1019 Score = 105 bits (116), Expect = 6e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27009 CTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAA 27068 || || |||||| | || || || ||||| ||| | ||| | ||||| | ||||| Sbjct 930 CTTACAGGCAAGACGATCACCCTCGAAGTTGAATCTAGTGACACTATTGATAACGTCAAG 871 Query 27069 CAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGC 27128 ||||| |||||||| || || || ||||| ||||| || ||| | || | ||||||| Sbjct 870 GCGAAAATCCAAGACAAGGAGGGTATCCCACCTGATCAGCAACGTCTCATTTTCGCCGGC 811 Query 27129 AAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTA 27188 || ||| | ||||| || ||| | ||||||||||| || || || | || ||| | Sbjct 810 AAGCAACTCGAAGATGGTCGTACCTTGTCCGATTACAATATCCAGGAGAAATCAACCCTT 751 Query 27189 CATTTGGTTTTGCGTTTGCGGGGTGG 27214 || |||||| | ||| | || ||||| Sbjct 750 CACTTGGTTCTCCGTCTCCGTGGTGG 725 Score = 104 bits (114), Expect = 2e-17 Identities = 150/209 (72%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 27010 TGACCGGCAAGTCTATTACTCTTG-AAGTGGAACCGTCCGACTCGATTGAGATGGTCAAA 27068 |||||||||| | || | ||||| |||| || | || ||| | ||||| | ||||| Sbjct 2386 TGACCGGCAAAACGATCA-TCTTGGAAGTCGAGTCCTCTGACACCATTGACAACGTCAAG 2328 Query 27069 CAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGC 27128 || ||||||||||| ||||| || || || || || || ||||| || | ||||| Sbjct 2327 GCGAAGATTCAAGACAAGGAAGGTATTCCCCCAGACCAGCAACGTTTGATTTTTGCCGGA 2268 Query 27129 AAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTA 27188 || ||| |||| ||| || || || | || |||||||| ||||| ||||| ||| | Sbjct 2267 AAGCAACTGGAGGACGGTCGCACTCTTGCGGACTACAACATCCAAAAAGAGTCAACCCTT 2208 Query 27189 CATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| ||||| | || | || ||||| || Sbjct 2207 CATCTGGTTCTCCGACTCCGTGGTGGAAT 2179 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27009 CTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAA 27068 || || || ||| | || || || ||||| || | ||||| | || || | ||||| Sbjct 2092 CTTACAGGAAAGACCATCACCCTCGAAGTCGAGTCCTCCGATACCATCGACAATGTCAAG 2033 Query 27069 CAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGC 27128 || || ||||| || || ||||| || || |||||||||||| | || | |||||| Sbjct 2032 GCCAAGATCCAAGATAAGGAGGGCATTCCCCCGGATCAACAGCGTCTTATCTTTGCCGGC 1973 Query 27129 AAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTA 27188 || ||| | || ||| | ||| || | |||||||||||||| |||||||| ||| | Sbjct 1972 AAGCAACTTGAGGACGGCCGAACCCTTGCTGATTACAACATTCAGAAGGAGTCTACCCTT 1913 Query 27189 CATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || | ||| | || ||||| || Sbjct 1912 CACTTAGTCCTCCGTCTTCGAGGTGGTAT 1884 >seq10791 Length=597 Score = 156 bits (172), Expect = 4e-33 Identities = 148/189 (78%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 27009 CTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAA 27068 || ||||| ||| | || ||||| ||||||||| |||| ||| ||||||| | |||||| Sbjct 397 CTCACCGGTAAGACGATCACTCTGGAAGTGGAATCGTCGGACACGATTGATAACGTCAAA 338 Query 27069 CAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGC 27128 || || ||||| || ||||| || || || |||||||| ||| |||| | ||||| Sbjct 337 GCTAAGATCCAAGATAAGGAAGGAATCCCCCCAGATCAACAACGTCTAATCTTTGCCGGT 278 Query 27129 AAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTA 27188 ||||||||||||||| || ||| || |||| ||||||||||| || ||||| ||| | Sbjct 277 AAACAATTGGAAGACGGTCGTACCCTTGCCGACTACAACATTCAGAAAGAGTCTACCCTT 218 Query 27189 CATTTGGTT 27197 ||||||||| Sbjct 217 CATTTGGTT 209 >seq10793 Length=1593 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27008 TCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAA 27067 ||| ||||||||| | || |||||||| || || | |||||| | ||||| | ||||| Sbjct 429 TCTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCTTCCGACACCATTGACAACGTCAA 370 Query 27068 ACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGG 27127 ||| || |||||||| ||||| || || || ||||||||||| || || | || || Sbjct 369 GGCAAAGATCCAAGACAAGGAAGGTATTCCCCCTGATCAACAGCGATTGATCTTTGCTGG 310 Query 27128 CAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTT 27187 || || ||||||||| | ||| | |||| |||||||| || |||||||| || || Sbjct 309 TAAGCAGTTGGAAGACGGCCGCACCTTGGCCGACTACAACATCCAGAAGGAGTCCACTTT 250 Query 27188 ACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| | || || ||| | || ||||| || Sbjct 249 GCATCTCGTGTTACGTCTTCGTGGTGGTAT 220 >seq10790 Length=2194 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27009 CTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAA 27068 || || |||||| | || || |||||||| ||| | ||| | || || | |||||| Sbjct 1947 CTCACAGGCAAGACGATCACCCTTGAAGTTGAATCCAGTGACACCATCGATAACGTCAAA 1888 Query 27069 CAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGC 27128 |||||||||||||| ||||| || || || ||||| || ||| | || | ||||||| Sbjct 1887 GCGAAAATTCAAGACAAGGAAGGTATCCCCCCTGATCAGCAACGTCTCATTTTCGCCGGC 1828 Query 27129 AAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTA 27188 || ||| | ||||| | ||| | ||||| |||||||| || ||||| || ||| | Sbjct 1827 AAGCAACTCGAAGATGGCCGTACCTTGTCCGACTACAACATCCAGAAGGAATCCACCCTC 1768 Query 27189 CATTTGGTTTTGCGTTTGCGGGGTGG 27214 || ||||| | ||| | || ||||| Sbjct 1767 CACTTGGTCCTCCGTCTCCGTGGTGG 1742 Score = 102 bits (112), Expect = 7e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || || |||||||| ||||| || || || ||||||||||||||||| | ||||| || Sbjct 2180 AAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAACAGCGTTTAATCTTTGCCGGAAAG 2121 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 ||| | ||||| || || | ||||||||||||| ||||||||||| || | || Sbjct 2120 CAACTCGAAGATGGTCGAACTCTGGCCGATTACAACATCCAAAAGGAGTCCACTCTTCAC 2061 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| | ||| | || ||||| || Sbjct 2060 CTGGTTCTCCGTCTCCGAGGTGGAAT 2035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434808267788160