Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq4123 136 3e-27 seq10791 127 1e-24 seq10793 104 2e-17 seq10792 102 6e-17 seq10790 102 6e-17 >seq4123 Length=2531 Score = 136 bits (150), Expect = 3e-27 Identities = 157/209 (75%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 23631 CCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAA 23689 |||||| || || ||||||||||| ||||| || || ||||||| |||| ||| | || Sbjct 1807 CCTCACCGGTAAGACGATCACTCTGGAAGTGGAATCGTCGGACACGATTGATAATGTCAA 1748 Query 23690 AACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCG 23749 | | || | | ||||| ||||| | || |||||||||| |||||||| ||||||| Sbjct 1747 AGCCAAGA-TCCAAGACAAGGAAGGCATCCCCACAGATCAACAACGTTTAATCTTTGCCG 1689 Query 23750 GCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACAT 23809 | ||||||||||| |||| || || | | ||| |||||||| || |||||||| || Sbjct 1688 GTAAACAACTGGAGGACGGTCGTACCCTTGCCGACTACAACATTCAGAAAGAGTCTACCC 1629 Query 23810 TACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 | ||||| ||| | | | ||||||||| Sbjct 1628 TTCATTTGGTTCTCCGACTCCGAGGAGGA 1600 Score = 105 bits (116), Expect = 5e-18 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAA 23694 || || ||||| |||||| | || || || || |||||||| |||| | | || Sbjct 1224 ACTGGCAAAACCATCACTTTGGAGGTCGAATCATCGGACACTATTGACAACGTCAAGGCC 1165 Query 23695 AAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAA 23754 || || || || ||||| | || || |||||||||||| |||| ||||| || || Sbjct 1164 AAGATCCAAGATAAGGAAGGAATCCCACCGGATCAACAGCGTCTAATCTTTGCTGGAAAG 1105 Query 23755 CAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACAT 23814 ||||| || || | || ||||| | |||||||||||| ||||| |||||||| | ||| Sbjct 1104 CAACTTGAGGATGGTCGAACTTTGGCCGATTACAACATTCAAAAGGAGTCCACCCTTCAT 1045 Query 23815 TTAGTT 23820 || ||| Sbjct 1044 TTGGTT 1039 Score = 105 bits (116), Expect = 5e-18 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAA 23694 || || |||||||||| | ||||| || ||| | ||||| |||| | | || Sbjct 2384 ACCGGCAAAACGATCATCTTGGAAGTCGAGTCCTCTGACACCATTGACAACGTCAAGGCG 2325 Query 23695 AAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAA 23754 || ||| ||||| |||||| | || ||||| || || ||||| || |||||||| || Sbjct 2324 AAGATTCAAGACAAGGAAGGTATTCCCCCAGACCAGCAACGTTTGATTTTTGCCGGAAAG 2265 Query 23755 CAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACAT 23814 |||||||| |||| |||||| | | || |||||||| ||||||||||| || | ||| Sbjct 2264 CAACTGGAGGACGGTCGCACTCTTGCGGACTACAACATCCAAAAAGAGTCAACCCTTCAT 2205 Query 23815 TTAGTT 23820 | ||| Sbjct 2204 CTGGTT 2199 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 23631 CCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAA 23689 ||| || ||||| || ||||| |||||||| || ||| | || || | || ||| | || Sbjct 2093 CCTTACAGGAAAGACCATCACCCTCGAAGTCGAGTCCTCCGATACCATCGACAATGTCAA 2034 Query 23690 AACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCG 23749 | || | | || || || || | || || |||||||||||| | || ||||||| Sbjct 2033 GGCCAAGA-TCCAAGATAAGGAGGGCATTCCCCCGGATCAACAGCGTCTTATCTTTGCCG 1975 Query 23750 GCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACAT 23809 |||| ||||| || |||| || || | | ||||||||||| || || ||||| || Sbjct 1974 GCAAGCAACTTGAGGACGGCCGAACCCTTGCTGATTACAACATTCAGAAGGAGTCTACCC 1915 Query 23810 TACATTTAGT 23819 | || ||||| Sbjct 1914 TTCACTTAGT 1905 Score = 84.2 bits (92), Expect = 1e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 23632 CTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAA 23691 || || || || |||||||| ||||||||||| || | |||||| |||| | | || Sbjct 930 CTTACAGGCAAGACGATCACCCTCGAAGTTGAATCTAGTGACACTATTGATAACGTCAAG 871 Query 23692 CAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGC 23751 ||||| ||||| || ||| | || || ||||| || ||| | || || |||||| Sbjct 870 GCGAAAATCCAAGACAAGGAGGGTATCCCACCTGATCAGCAACGTCTCATTTTCGCCGGC 811 Query 23752 AAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACA 23795 || ||||| ||||| | || || || ||||||||| || || Sbjct 810 AAGCAACTCGAAGATGGTCGTACCTTGTCCGATTACAATATCCA 767 >seq10791 Length=597 Score = 127 bits (140), Expect = 1e-24 Identities = 153/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 23631 CCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAA 23690 |||||| || || ||||||||||| ||||| || || ||||||| |||| | | || Sbjct 398 CCTCACCGGTAAGACGATCACTCTGGAAGTGGAATCGTCGGACACGATTGATAACGTCAA 339 Query 23691 ACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGG 23750 | || || || || ||||| | || ||||||||||| ||| |||| |||||||| Sbjct 338 AGCTAAGATCCAAGATAAGGAAGGAATCCCCCCAGATCAACAACGTCTAATCTTTGCCGG 279 Query 23751 CAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATT 23810 |||||| ||||||||| || || | | ||| |||||||| || |||||||| || | Sbjct 278 TAAACAATTGGAAGACGGTCGTACCCTTGCCGACTACAACATTCAGAAAGAGTCTACCCT 219 Query 23811 ACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||||| ||| | | | ||||||||| Sbjct 218 TCATTTGGTTCTCCGACTTCGAGGAGGA 191 >seq10793 Length=1593 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 23632 CTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAA 23691 || || || || || |||||||| || || || || | ||||| |||| | | || Sbjct 428 CTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCTTCCGACACCATTGACAACGTCAAG 369 Query 23692 CAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGC 23751 ||| || ||||| |||||| | || || ||||||||||| || || ||||| || Sbjct 368 GCAAAGATCCAAGACAAGGAAGGTATTCCCCCTGATCAACAGCGATTGATCTTTGCTGGT 309 Query 23752 AAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTA 23811 || || ||||||||| ||||| || | ||| |||||||| || || |||||||| || Sbjct 308 AAGCAGTTGGAAGACGGCCGCACCTTGGCCGACTACAACATCCAGAAGGAGTCCACTTTG 249 Query 23812 CATTTAGTTTTA 23823 ||| | || ||| Sbjct 248 CATCTCGTGTTA 237 >seq10792 Length=373 Score = 102 bits (112), Expect = 6e-17 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAA 23694 || || ||||||||||| | ||||| || ||| | ||||| |||| | | || Sbjct 225 ACCGGCAAAACGATCACCTTGGAAGTCGAGTCCTCCGACACCATTGACAACGTCAAGGCG 166 Query 23695 AAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAA 23754 || || ||||| |||||| | || ||||| || || ||||| || |||||||| || Sbjct 165 AAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAGCAACGTTTGATTTTTGCCGGAAAG 106 Query 23755 CAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACAT 23814 |||||||| |||| ||||| | | || |||||||| ||||||||||| || | ||| Sbjct 105 CAACTGGAGGACGGTCGCACCCTTGCGGACTACAACATCCAAAAAGAGTCGACCCTTCAT 46 Query 23815 TTAGTT 23820 | ||| Sbjct 45 CTGGTT 40 >seq10790 Length=2194 Score = 102 bits (112), Expect = 6e-17 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||| ||||| | || || ||||||||||||||||| |||||||| || ||||| ||| Sbjct 2171 GACAAGGAAGGAATCCCTCCGGATCAACAGCGTTTAATCTTTGCCGGAAAGCAACTCGAA 2112 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCAC 23807 || | || ||| | | |||||||||||| ||||| |||||||| Sbjct 2111 GATGGTCGAACTCTGGCCGATTACAACATCCAAAAGGAGTCCAC 2068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337926147331064