Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq10793 136 9e-27 seq10790 136 9e-27 seq4123 131 4e-25 seq18244 127 5e-24 seq10792 123 6e-23 seq10791 98.7 2e-15 >seq10793 Length=1593 Score = 136 bits (150), Expect = 9e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | | || || || | |||||| || || |||| ||||| |||||||| || Sbjct 228 ACGAAGACGTAACACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGT 287 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| | |||||| ||||| ||||| | ||| ||||| || || |||||||| Sbjct 288 GCGGCCGTCTTCCAACTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGGGGAATACC 347 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||||||||||| ||| || || |||||||| || | || || || | Sbjct 348 TTCCTTGTCTTGGATCTTTGCCTTGACGTTGTCAATGGTGTCGGAAGACTCGACCTCAAG 407 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||| |||||||| || Sbjct 408 AGTGATGGTCTTGCCGGT 425 Score = 105 bits (116), Expect = 2e-17 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| ||||| || || || |||||||| ||||||||||| ||||| || || ||| Sbjct 5 CCATCTTCCAGCTGTTTACCGGCAAAGATAAGACGTTGTTGGTCTGGCGGGATGCCCTCC 64 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 || ||||||||||| ||| || || || ||||| |||| || || |||| ||| Sbjct 65 TTATCTTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGAGGACTCAACCTCTAGGGTG 124 Query 225676 ATCGTCTTGCCCGTCAAA 225693 || || ||||| || ||| Sbjct 125 ATGGTTTTGCCAGTTAAA 142 >seq10790 Length=2194 Score = 136 bits (150), Expect = 9e-27 Identities = 145/189 (77%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | |||||| |||||||| || |||| ||||| |||| ||| || | |||||| Sbjct 1757 AGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTACGGCCATCT 1816 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || ||||| || || ||||| || || || || ||||||||||||||| Sbjct 1817 TCGAGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGGGGGATACCTTCCTTGTCT 1876 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || || ||| || || || ||||||||||| || ||| || || | |||||||| Sbjct 1877 TGAAT-TTTCGCTTTGACGTTATCGATGGTGTCACTGGATTCAACTTCAAGGGTGATCGT 1935 Query 225681 CTTGCCCGT 225689 |||||| || Sbjct 1936 CTTGCCTGT 1944 Score = 123 bits (136), Expect = 6e-23 Identities = 104/128 (81%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| |||||||| || ||||||| ||||||||||||| ||||| |||||| Sbjct 2053 AGAACCAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGCCAGAGTTCGACCATCT 2112 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || || ||||| | || ||||| || || || || |||||||||||| Sbjct 2113 TCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCGGAGGGATTCCTTCCTTGTCT 2172 Query 225622 TGGATCTT 225629 |||||||| Sbjct 2173 TGGATCTT 2180 >seq4123 Length=2531 Score = 131 bits (144), Expect = 4e-25 Identities = 138/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || ||||| || ||||| | ||||||||||||||||||| ||||| || || ||| Sbjct 1046 TGAAGGGTGGACTCCTTTTGAATGTTGTAATCGGCCAAAGTTCGACCATCCTCAAGTTGC 1105 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||| ||||| || || ||||| || || || || |||||||| ||||||||||| Sbjct 1106 TTTCCAGCAAAGATTAGACGCTGTTGATCCGGTGGGATTCCTTCCTTATCTTGGATCTTG 1165 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| || || || ||||| || | ||| || || || ||||| || ||||| || Sbjct 1166 GCCTTGACGTTGTCAATAGTGTCCGATGATTCGACCTCCAAAGTGATGGTTTTGCCAGTT 1225 Query 225691 AA 225692 || Sbjct 1226 AA 1227 Score = 123 bits (136), Expect = 6e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||| || || || || || || || |||||||||| ||||| || || | ||| Sbjct 2187 ACGGAGTCGGAGAACCAGATGAAGGGTTGACTCTTTTTGGATGTTGTAGTCCGCAAGAGT 2246 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || || ||||| || || || || | ||||| ||||| || |||||||| Sbjct 2247 GCGACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGGGAATACC 2306 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||| ||||| ||| || || |||||||| |||| || || || || Sbjct 2307 TTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCAATGGTGTCAGAGGACTCGACTTCCAA 2366 Query 225672 CGTGATCGTCTTGCCCGTCAA 225692 ||||||| ||||| ||||| Sbjct 2367 GATGATCGTTTTGCCGGTCAA 2387 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||||| | ||| || || || || || || | |||||||| || | ||| Sbjct 1893 CGAAGACGGAGGACTAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTT 1952 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || || ||||| || || |||||||| || ||||| || || ||||| || Sbjct 1953 CGGCCGTCCTCAAGTTGCTTGCCGGCAAAGATAAGACGCTGTTGATCCGGGGGAATGCCC 2012 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||| ||||||||||| ||| ||| |||||||| || |||| || || || | Sbjct 2013 TCCTTATCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGGAGGACTCGACTTCGAGG 2072 Query 225673 GTGATCGTCTTGCCCGT 225689 ||||| ||||| || || Sbjct 2073 GTGATGGTCTTTCCTGT 2089 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || || |||| | |||| ||||||||||| ||| || | |||||| Sbjct 740 AGAACCAAGTGAAGGGTTGATTTCTCCTGGATATTGTAATCGGACAAGGTACGACCATCT 799 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || ||||| || || ||||| || || || || ||||| ||||||||| Sbjct 800 TCGAGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGTGGGATACCCTCCTTGTCT 859 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||| || || || ||||| | ||| || || | ||||||||| Sbjct 860 TGGATTTTCGCCTTGACGTTATCAATAGTGTCACTAGATTCAACTTCGAGGGTGATCGTC 919 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 920 TTGCCTGT 927 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||||| ||||| || || |||| ||||| ||||| | || | || ||| Sbjct 1324 AGGACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCT 1383 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || || || ||||| || ||||||||||| || ||||| || ||||||||| Sbjct 1384 TCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGAGGAATGCCCTCCTTGTCT 1443 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || || || || || || | || || || || ||||| ||| Sbjct 1444 TGGATCTTAGCCTTGACGTTGTCAATAGTATCGGACGACTCAACTTCCAAAGTGATGGTC 1503 Query 225682 TTGCCCGT 225689 || || || Sbjct 1504 TTTCCTGT 1511 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || |||| || || | || || || || ||||| || | ||||| ||||| | || Sbjct 1607 CGGAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCAAGGGTA 1666 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || || || || || || ||||| | |||||||| || | || || ||| Sbjct 1667 CGACCGTCCTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGTGGGGATGCCT 1726 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||||||||| || ||| || || ||||| || | |||||| || | Sbjct 1727 TCCTTGTCTTGGATCTTGGCTTTGACATTATCAATCGTGTCCGACGATTCCACTTCCAGA 1786 Query 225673 GTGATCGTCTTGCCCGT 225689 ||||||||||| || || Sbjct 1787 GTGATCGTCTTACCGGT 1803 >seq18244 Length=1615 Score = 127 bits (140), Expect = 5e-24 Identities = 203/288 (70%), Gaps = 5/288 (2%) Strand=Plus/Plus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTAT-AGGTACTATATTTTCTATGAT 7499 || |||||||||||||||| ||||| || ||||| ||||||| |||||| | | Sbjct 75 ACATTATATTTAATATTTGCATTATTTTCAGG-ATTATTAGGTACTGCTTTTTCTGTTTT 133 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559 || || ||||||||| || || || |||| || | || ||| | ||| | || Sbjct 134 AATTAGATTAGAATTAAGTGGACCTGGAGTTCAA---TTTATTGCTAACAATCAATTATA 190 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619 || ||| ||||| || ||||| | | |||||||||||| | |||||||| | | | Sbjct 191 TAATAGTATAATTACAGCTCATGCTATATTAATGATTTTCTTTATGGTTATGCCTGCTTT 250 Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679 ||||| || || || || | || | ||||||||| | || | ||||||||||| || Sbjct 251 AATAGGAGGATTTGGTAACTTCTTAATGCCTTTAATGGTAGGAGGACCTGATATGGCATT 310 Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 || || | || || || ||||| |||||| |||| ||| ||||| Sbjct 311 CCCTAGATTAAATAACATTAGTTTCTGATTATTACCACCTAGTTTATT 358 >seq10792 Length=373 Score = 123 bits (136), Expect = 6e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||| || || || || || || || |||||||||| ||||| || || | || Sbjct 28 ACGGAGTCGGAGAACCAGATGAAGGGTCGACTCTTTTTGGATGTTGTAGTCCGCAAGGGT 87 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || || ||||| || || || || | ||||| ||||| || || ||||| Sbjct 88 GCGACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGGGGATACC 147 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||||||||| ||| || || |||||||| |||| || || || || Sbjct 148 TTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGACTTCCAA 207 Query 225672 CGTGATCGTCTTGCCCGTCAA 225692 |||||||| ||||| ||||| Sbjct 208 GGTGATCGTTTTGCCGGTCAA 228 >seq10791 Length=597 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||||| || || | || || || || ||||| || | ||||| ||||| | || Sbjct 198 CGAAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCAAGGGTA 257 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || ||||| | || || || || ||||| || |||||||| || || || || ||| Sbjct 258 CGACCGTCTTCCAATTGTTTACCGGCAAAGATTAGACGTTGTTGATCTGGGGGGATTCCT 317 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||| ||||||||||| || || || || ||||| || | |||||| || | Sbjct 318 TCCTTATCTTGGATCTTAGCTTTGACGTTATCAATCGTGTCCGACGATTCCACTTCCAGA 377 Query 225673 GTGATCGTCTTGCCCGT 225689 ||||||||||| || || Sbjct 378 GTGATCGTCTTACCGGT 394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192221671819052