Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq10790 111 4e-19 seq4123 105 2e-17 seq10792 98.7 2e-15 seq10791 98.7 2e-15 seq10793 89.7 1e-12 >seq10790 Length=2194 Score = 111 bits (122), Expect = 4e-19 Identities = 108/137 (79%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || || |||||||| ||||| |||||||||||||||||||| | ||||| Sbjct 2046 GAGACGGAGAACCAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGCCAGAGTTCG 2105 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 |||||||| || ||||| ||||| ||||| | | ||| || |||| | ||||||| Sbjct 2106 ACCATCTTCGAGTTGCTTT--CCGGCAAAGATTAAACGCTGTTGATCCGGAGGGATTCCT 2163 Query 152004 TCCTTTTCTTGAATTTT 152020 ||||| ||||| || || Sbjct 2164 TCCTTGTCTTGGATCTT 2180 Score = 98.7 bits (108), Expect = 2e-15 Identities = 143/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| | || || || || || || ||||||||||| |||| || || | Sbjct 1750 GAGACGGAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTACG 1809 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| || || |||||||| || || | ||||| || | | ||| ||||| Sbjct 1810 GCCATCTTCGAGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGGGGGATACCTTC 1869 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCAAGA 152063 ||| ||||||||||| |||||| | || | | ||| ||| | || |||||||| Sbjct 1870 CTTGTCTTGAATTTTCGCTTTGACGTTATCGATGGTGTCACTGGA--TTCAACTTCAAGG 1927 Query 152064 GTAATAGTTTTGCCCGTGAG 152083 || || || ||||| ||||| Sbjct 1928 GTGATCGTCTTGCCTGTGAG 1947 >seq4123 Length=2531 Score = 105 bits (116), Expect = 2e-17 Identities = 139/191 (73%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || | |||||| || ||||| ||||| |||||||||||||| ||||||| ||||| Sbjct 1036 GAGAACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCGGCCAAAGTTCGACCATC 1095 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || || ||||| || || ||||| || | ||| || |||| | |||||||||||| Sbjct 1096 CTCAAGTTGCTTT--CCAGCAAAGATTAGACGCTGTTGATCCGGTGGGATTCCTTCCTTA 1153 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 ||||| || || ||||| | || | |||| || || || || | ||| || Sbjct 1154 TCTTGGATCTTGGCCTTGACGTTGTCAATAGTGTCCGATGATTCGACCTCCAAAGTGATG 1213 Query 152070 GTTTTGCCCGT 152080 |||||||| || Sbjct 1214 GTTTTGCCAGT 1224 Score = 102 bits (112), Expect = 2e-16 Identities = 144/198 (73%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| ||| || |||||||| || |||||||||||||||||||| || || | ||| | Sbjct 2190 GAGTCGGAGAACCAGATGAAGGGTTGACTCTTTTTGGATGTTGTAGTCCGCAAGAGTGCG 2249 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || || || ||||| ||||| || || | | |||||||| | | || ||| Sbjct 2250 ACCGTCCTCCAGTTGCTTT--CCGGCAAAAATCAAACGTTGCTGGTCTGGGGGAATACCT 2307 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTT-CAAG 152062 ||||| |||||||| || ||||| | || | | |||| || ||| |||| |||| Sbjct 2308 TCCTTGTCTTGAATCTTCGCCTTGACGTTGTCAATGGTGTCAGAGGACTCGACTTCCAAG 2367 Query 152063 AGTAATAGTTTTGCCCGT 152080 | | || |||||||| || Sbjct 2368 A-TGATCGTTTTGCCGGT 2384 Score = 96.9 bits (106), Expect = 8e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| ||| || | |||||| ||||||||||| || |||||||| ||||| | || | Sbjct 1609 GAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCAAGGGTACG 1668 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || ||| ||||| ||||| | | || || || | | ||| ||||| Sbjct 1669 ACCGTCCTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGTGGGGATGCCTTC 1728 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||| || || ||||||| | || | |||| || || ||||| ||||| Sbjct 1729 CTTGTCTTGGATCTTGGCTTTGACATTATCAATCGTGTCCGACGATTCCACTTCCAGAGT 1788 Query 152066 AATAGTTTTGCCCGTGAG 152083 || || || || ||||| Sbjct 1789 GATCGTCTTACCGGTGAG 1806 Score = 86.0 bits (94), Expect = 1e-11 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| | ||||| |||||||| || || ||||||||||| || | |||| || || Sbjct 1901 GAGGACTAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTTCGGCCGTC 1960 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || ||||| |||||||| | ||| || |||| | || || ||||| || Sbjct 1961 CTCAAGTTGCTTGCCGGCAAAGATAAGACGCTGTTGATCCGGGGGAATGCCCTCCTTATC 2020 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||| || || |||||| | || | | | || || ||| ||||| || || || || Sbjct 2021 TTGGATCTTGGCCTTGACATTGTCGATGGTATCGGAGGACTCGACTTCGAGGGTGATGGT 2080 Query 152072 TTTGCCCGTGAG 152083 || || || || Sbjct 2081 CTTTCCTGTAAG 2092 >seq10792 Length=373 Score = 98.7 bits (108), Expect = 2e-15 Identities = 141/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| ||| || |||||||| || |||||||||||||||||||| || || | || | Sbjct 31 GAGTCGGAGAACCAGATGAAGGGTCGACTCTTTTTGGATGTTGTAGTCCGCAAGGGTGCG 90 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || || || ||||| ||||| || || | | |||||||| | | ||| ||| Sbjct 91 ACCGTCCTCCAGTTGCTTT--CCGGCAAAAATCAAACGTTGCTGGTCTGGGGGGATACCT 148 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| ||||| || || ||||| | || | | |||| || ||| ||||| | Sbjct 149 TCCTTGTCTTGGATCTTCGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGACTTCCAAG 208 Query 152064 GTAATAGTTTTGCCCGT 152080 || || |||||||| || Sbjct 209 GTGATCGTTTTGCCGGT 225 >seq10791 Length=597 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| ||| || | |||||| ||||||||||| || |||||||| ||||| | || | Sbjct 201 AGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCAAGGGTACGA 260 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 || ||||| | ||| ||||| ||||| || | || || || | | |||||||||| Sbjct 261 CCGTCTTCCAATTGTTTACCGGCAAAGATTAGACGTTGTTGATCTGGGGGGATTCCTTCC 320 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||| || || |||||| | || | |||| || || ||||| ||||| Sbjct 321 TTATCTTGGATCTTAGCTTTGACGTTATCAATCGTGTCCGACGATTCCACTTCCAGAGTG 380 Query 152067 ATAGTTTTGCCCGTGAG 152083 || || || || ||||| Sbjct 381 ATCGTCTTACCGGTGAG 397 >seq10793 Length=1593 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 || ||||| | ||| ||||| || ||||||||||| ||||| || || | || ||||| Sbjct 241 ACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCTTCC 300 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 | || || || ||||| | | ||| || || | | || |||||||| ||||| Sbjct 301 AACTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGGGGAATACCTTCCTTGTCTTGG 360 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || ||| ||||| | || | | |||| ||| ||| || |||||||| || || ||| Sbjct 361 ATCTTTGCCTTGACGTTGTCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGTCTTG 420 Query 152076 CCCGTGAGA 152084 || || ||| Sbjct 421 CCGGTAAGA 429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153521319321118