Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq10792 178 3e-39 seq4123 174 3e-38 seq10793 161 2e-34 seq10791 159 7e-34 seq10790 149 1e-30 >seq10792 Length=373 Score = 178 bits (196), Expect = 3e-39 Identities = 163/206 (79%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || |||||||| | || |||||||||||||||||||| ||| Sbjct 23 CCACCACGGAGTCGGAGAACCAGATGAAGGGTCGACTCTTTTTGGATGTTGTAGTCCGCA 82 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| || ||||| ||||| || |||||||| ||||||||||| ||||| || Sbjct 83 AGGGTGCGACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGGGG 142 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||| ||||||||||||||||| || || ||| | || || ||||| || | |||||| Sbjct 143 ATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGACT 202 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAA 283078 || | |||||||| || || ||||| Sbjct 203 TCCAAGGTGATCGTTTTGCCGGTCAA 228 >seq4123 Length=2531 Score = 174 bits (192), Expect = 3e-38 Identities = 162/206 (79%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || |||||||| | || |||||||||||||||||||| ||| Sbjct 2182 CCACCACGGAGTCGGAGAACCAGATGAAGGGTTGACTCTTTTTGGATGTTGTAGTCCGCA 2241 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| || ||||| ||||| || |||||||| ||||||||||| ||||| ||| Sbjct 2242 AGAGTGCGACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGGGA 2301 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||| ||||||||||| ||||| || || ||| | || || ||||| || | |||||| Sbjct 2302 ATACCTTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCAATGGTGTCAGAGGACTCGACT 2361 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAA 283078 || | ||||||| || || ||||| Sbjct 2362 TCCAAGATGATCGTTTTGCCGGTCAA 2387 Score = 172 bits (190), Expect = 1e-37 Identities = 160/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || || || |||| ||| | || ||||| || ||||||||||| ||| Sbjct 1601 CCTCCTCGGAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCA 1660 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || || ||||| |||||||| ||||||||||| ||||||||||| || || Sbjct 1661 AGGGTACGACCGTCCTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGTGGGG 1720 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||||||||||||||| ||||| || |||| || |||||||| | ||| ||| Sbjct 1721 ATGCCTTCCTTGTCTTGGATCTTGGCTTTGACATTATCAATCGTGTCCGACGATTCCACT 1780 Query 283053 TCGAGAGTGATCGTCTTACCCGT 283075 || ||||||||||||||||| || Sbjct 1781 TCCAGAGTGATCGTCTTACCGGT 1803 Score = 154 bits (170), Expect = 3e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || || || |||| ||| | ||| || || |||||||||||||| || Sbjct 1309 CCTCCTCGGAGACGGAGGACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCG 1368 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| || || || |||||||| ||||||||||| | |||||||||||| ||| Sbjct 1369 AGGGTGCGACCGTCTTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGAGGA 1428 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||||||||||||||| || || ||| | || ||||| || || | || ||| Sbjct 1429 ATGCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTGTCAATAGTATCGGACGACTCAACT 1488 Query 283053 TCGAGAGTGATCGTCTTACCCGT 283075 || | |||||| ||||| || || Sbjct 1489 TCCAAAGTGATGGTCTTTCCTGT 1511 Score = 141 bits (156), Expect = 2e-28 Identities = 169/223 (76%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 282863 AAAACGTGAACCACCACGCAGGCGAAGTACCAGATGTAACGT-GCTTTCTTTTTGGATGT 282921 ||| | || ||||||||| || || || |||| || | || | ||||| | |||| | Sbjct 715 AAATCATGCACCACCACGGAGACGGAGAACCAAGTGAAGGGTTGATTTCTCCT-GGATAT 773 Query 282922 TGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGT 282980 |||| || | |||| || || ||||| || ||||| || ||||| || || | |||||| Sbjct 774 TGTAATCGGACAAG-GTACGACCATCTTCGAGTTGCTTGCCGGCGAAAATGAGACGTTGC 832 Query 282981 TGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCC 283040 || ||| || |||||||||||||||||||| || || || ||| |||| |||||||| Sbjct 833 TGATCAGGTGGGATACCCTCCTTGTCTTGGATTTTCGCCTTGACGTTATCAATAGTGTCA 892 Query 283041 GAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCT 283083 || ||| |||||||| ||||||||||| || || |||||| Sbjct 893 CTAGATTCAACTTCGAGGGTGATCGTCTTGCCTGT--AAGTCT 933 Score = 140 bits (154), Expect = 7e-28 Identities = 131/167 (78%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || |||||||| |||||||| || ||||| ||||| ||||| || ||||||||| Sbjct 1923 TCCTTCTGAATGTTGTAATCAGCAAGGGTTCGGCCGTCCTCAAGTTGCTTGCCGGCAAAG 1982 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | ||| ||||| || ||||| |||||||| ||||||||||| || || || | Sbjct 1983 ATAAGACGCTGTTGATCCGGGGGAATGCCCTCCTTATCTTGGATCTTGGCCTTGACATTG 2042 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 ||||| || || || | ||||||||||| ||||| ||||| || || Sbjct 2043 TCGATGGTATCGGAGGACTCGACTTCGAGGGTGATGGTCTTTCCTGT 2089 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || || | || |||| ||| | ||| || ||||| |||||||| || || Sbjct 1022 CCACCTCGGAGATGGAGAACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCGGCC 1081 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || || |||||||| ||||| || || |||||||| | ||| ||||| || || Sbjct 1082 AAAGTTCGACCATCCTCAAGTTGCTTTCCAGCAAAGATTAGACGCTGTTGATCCGGTGGG 1141 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||| ||||||||||| || || ||| | || ||||||||||| | |||||| Sbjct 1142 ATTCCTTCCTTATCTTGGATCTTGGCCTTGACGTTGTCAATAGTGTCCGATGATTCGACC 1201 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAA 283078 || | |||||| || || || || || Sbjct 1202 TCCAAAGTGATGGTTTTGCCAGTTAA 1227 >seq10793 Length=1593 Score = 161 bits (178), Expect = 2e-34 Identities = 158/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | || ||||| || ||| || || |||||||||||||| || Sbjct 222 ACCACCACGAAGACGTAACACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGC 281 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | |||||||| || || | || || || ||||||||||| || ||||| ||| || Sbjct 282 CAAGGTGCGGCCGTCTTCCAACTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGGGG 341 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| |||||||||||||||||||| || ||| | || || ||||| |||| ||||| Sbjct 342 AATACCTTCCTTGTCTTGGATCTTTGCCTTGACGTTGTCAATGGTGTCGGAAGACTCGAC 401 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 || |||||||| ||||| || || Sbjct 402 CTCAAGAGTGATGGTCTTGCCGGT 425 Score = 114 bits (126), Expect = 3e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 282939 CGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCC 282998 |||||||| || || ||||| ||||||||||| | |||||||||||| ||| || ||| Sbjct 2 CGGCCATCTTCCAGCTGTTTACCGGCAAAGATAAGACGTTGTTGGTCTGGCGGGATGCCC 61 Query 282999 TCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGA 283058 ||||| ||||||||||| || || ||| | || || |||||||| | || || || || Sbjct 62 TCCTTATCTTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGAGGACTCAACCTCTAGG 121 Query 283059 GTGATCGTCTTACCCGTCAAA 283079 ||||| || || || || ||| Sbjct 122 GTGATGGTTTTGCCAGTTAAA 142 Score = 102 bits (112), Expect = 2e-16 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 282967 AGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGG 283026 ||||||||||||||||||| || ||||||||||||||||| || || || || ||| Sbjct 683 AGATCAAACGTTGTTGGTCTGGAGGGATACCCTCCTTGTCTTGAATTTTAGCCTTGACGT 742 Query 283027 TATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 | ||||| ||||| || | || |||||||||||||| || ||||| || Sbjct 743 TGTCGATGGTGTCGGACGACTCAACTTCGAGAGTGATGGTTTTACCGGT 791 >seq10791 Length=597 Score = 159 bits (176), Expect = 7e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || || || |||| ||| | || ||||| || ||||||||||| ||| Sbjct 192 CCTCCTCGAAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCA 251 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || || || || | |||||| ||||||||||| | ||||||||| || || Sbjct 252 AGGGTACGACCGTCTTCCAATTGTTTACCGGCAAAGATTAGACGTTGTTGATCTGGGGGG 311 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||| ||||||||||| ||||| ||| |||| || |||||||| | ||| ||| Sbjct 312 ATTCCTTCCTTATCTTGGATCTTAGCTTTGACGTTATCAATCGTGTCCGACGATTCCACT 371 Query 283053 TCGAGAGTGATCGTCTTACCCGT 283075 || ||||||||||||||||| || Sbjct 372 TCCAGAGTGATCGTCTTACCGGT 394 >seq10790 Length=2194 Score = 149 bits (164), Expect = 1e-30 Identities = 163/214 (76%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 282863 AAAACGTGAACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTT 282922 ||| | || ||||||||| || || || |||| || | ||| ||| || |||||||| Sbjct 1732 AAATCATGCACCACCACGGAGACGGAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTT 1791 Query 282923 GTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTT 282981 |||||| | |||| || |||||||| || ||||| || ||||| || || | |||||| | Sbjct 1792 GTAGTCGGACAAG-GTACGGCCATCTTCGAGTTGCTTGCCGGCGAAAATGAGACGTTGCT 1850 Query 282982 GGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCG 283041 | ||| || ||||| ||||||||||| || || ||||| ||| ||||||| ||||| Sbjct 1851 GATCAGGGGGGATACCTTCCTTGTCTTGAATTTTCGCTTTGACGTTATCGATGGTGTCAC 1910 Query 283042 AAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 | ||| ||||| || ||||||||||| || || Sbjct 1911 TGGATTCAACTTCAAGGGTGATCGTCTTGCCTGT 1944 Score = 114 bits (126), Expect = 3e-20 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || || || || ||||| || | ||| || |||||||||||||| || || Sbjct 2038 CCACCTCGGAGACGGAGAACCAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGCC 2097 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || ||||| || ||||| || ||||||||||| ||||| ||||| || || Sbjct 2098 AGAGTTCGACCATCTTCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCGGAGGG 2157 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACG 283025 || || ||||||||||||||||| || || ||| Sbjct 2158 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACG 2190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046467512952732