Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq10792 122 6e-23 seq10790 113 3e-20 seq4123 113 3e-20 seq10793 105 5e-18 seq10791 102 6e-17 >seq10792 Length=373 Score = 122 bits (134), Expect = 6e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| || | |||| | ||||| ||||| || ||| |||||||||||||| Sbjct 16 TTGCATTCCACCACGGAGTCGGAGAACCAGATGAAGGGTCGACTCTTTTTGGATGTTGTA 75 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || || || ||| |||| ||||| ||||| |||||||| |||||||| ||||| || Sbjct 76 GTCCGCAAGGGTGCGACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTC 135 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || || | ||||||||| || |||||| ||| | | | |||||||||| ||| Sbjct 136 TGGGGGGATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCAATGGTGTCGGAGGA 195 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGT 44313 || || |||| || ||||| || || || Sbjct 196 CTCGACTTCCAAGGTGATCGTTTTGCCGGT 225 >seq10790 Length=2194 Score = 113 bits (124), Expect = 3e-20 Identities = 112/143 (78%), Gaps = 4/143 (3%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| |||| || | | ||||||||||| ||| |||||||||||||||||| Sbjct 2031 TTGCATTCCACCTCGGAGACGGAGAACCAGGTGAAGAGTGGACTCCTTTTGGATGTTGTA 2090 Query 44164 ATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 |||||| ||||| || | || || || ||||| ||||||||||| |||||||| ||| Sbjct 2091 ATCGGCCAGAGTT--CGACCATCTTCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGA 2148 Query 44222 TCTGAAGGCACACCTTCCTTTTC 44244 || | ||| | |||||||| || Sbjct 2149 TCCGGAGGGATTCCTTCCTTGTC 2171 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/191 (72%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187 |||| ||| || ||| ||||| ||||||||||| |||| | || | || | || || Sbjct 1760 ACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGT-ACGGCCATCTTC 1818 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || ||||| ||||| || || | ||| |||||||| | || | ||||||||| || Sbjct 1819 GAGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGGGGGATACCTTCCTTGTCTTG 1878 Query 44248 TATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 || ||| |||| | ||| | |||||||| |||||| || || | || ||||||| Sbjct 1879 AATTTTC-GCTTTGACGTTATCGATGGTGTCACTGGATTCAACTTCAAGGGTGATCGTCT 1937 Query 44307 TTCCCGTGAGG 44317 | || |||||| Sbjct 1938 TGCCTGTGAGG 1948 >seq4123 Length=2531 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| || | |||| | ||||| ||||| || ||| |||||||||||||| Sbjct 2175 TTGCATTCCACCACGGAGTCGGAGAACCAGATGAAGGGTTGACTCTTTTTGGATGTTGTA 2234 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || || || ||| |||| ||||| ||||| |||||||| |||||||| ||||| || Sbjct 2235 GTCCGCAAGAGTGCGACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTC 2294 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || || | ||||||||| || |||||| ||| | | | |||||||| | ||| Sbjct 2295 TGGGGGAATACCTTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCAATGGTGTCAGAGGA 2354 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGT 44313 || || |||| | ||||| || || || Sbjct 2355 CTCGACTTCCAAGATGATCGTTTTGCCGGT 2384 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 ||||| |||| |||| | |||| ||||| || ||| || || |||||||| ||| Sbjct 1598 ATTCCTCCTCGGAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCG 1657 Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227 || || || |||| ||||| || || ||||||||||| ||||| || ||||||| Sbjct 1658 GCAAGGGTACGACCGTCCTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGTG 1717 Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTC 44286 || | |||||||| || ||||| |||| | || | || ||||| | ||||| Sbjct 1718 GGGATGCCTTCCTTGTCTTGGATCTT-GGCTTTGACATTATCAATCGTGTCCGACGATTC 1776 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 ||| |||| || |||||||| || |||||| Sbjct 1777 CACTTCCAGAGTGATCGTCTTACCGGTGAGG 1807 Score = 96.9 bits (106), Expect = 2e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| |||| || | | |||| || || ||| |||||| ||||||||||| || Sbjct 1305 CATTCCTCCTCGGAGACGGAGGACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTC 1364 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 |||||| ||| |||| || || || || ||||||||||| | ||| || || |||| Sbjct 1365 GGCGAGGGTGCGACCGTCTTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGG 1424 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | || ||||| || ||||| ||| | | | || || |||| || || Sbjct 1425 AGGAATGCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTGTCAATAGTATCGGACGACTC 1484 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 || |||| || || |||||||| |||||| Sbjct 1485 AACTTCCAAAGTGATGGTCTTTCCTGTGAGG 1515 Score = 87.8 bits (96), Expect = 1e-12 Identities = 132/186 (71%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 44134 GTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTG 44193 |||||| || |||||| || ||||||||||| || || || |||| || || || Sbjct 1910 GTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTTCGGCCGTCCTCAAGTTG 1969 Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253 ||| ||||||||||| | |||||| ||||| | || | || ||||| || ||||| Sbjct 1970 CTTGCCGGCAAAGATAAGACGCTGTTGATCCGGGGGAATGCCCTCCTTATCTTGGATCTT 2029 Query 44254 CTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCC 44311 ||| || ||| | ||||| |||| ||| || || || | || || |||||||| Sbjct 2030 GGCCTTGACATTGT--CGATGGTATCGGAGGACTCGACTTCGAGGGTGATGGTCTTTCCT 2087 Query 44312 GTGAGG 44317 || ||| Sbjct 2088 GTAAGG 2093 Score = 84.2 bits (92), Expect = 2e-11 Identities = 132/187 (71%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCGT 44186 |||| ||||| ||| ||||||||| |||||||||||||| |||| || | || | Sbjct 1040 ACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCGGCCAAAGTT--CGACCATCCT 1097 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 | || ||||| || |||||||| | |||||| ||||| | || | |||||||| || Sbjct 1098 CAAGTTGCTTTCCAGCAAAGATTAGACGCTGTTGATCCGGTGGGATTCCTTCCTTATCTT 1157 Query 44247 TTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| | | | || ||||| | ||||| ||||||| || || || | Sbjct 1158 GGATCTTGGCCTTGACGTTGTCAATAGTGTCCGATGATTCGACCTCCAAAGTGATGGTTT 1217 Query 44307 TTCCCGT 44313 | || || Sbjct 1218 TGCCAGT 1224 >seq10793 Length=1593 Score = 105 bits (116), Expect = 5e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 44126 AACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCG 44185 ||||| || || | ||| |||||| ||||||||||| ||||| | ||| |||| Sbjct 238 AACACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCT 297 Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 |||| |||||| || ||||||||||| ||||| ||||| | || | ||||||||| || Sbjct 298 TCCAACTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGGGGAATACCTTCCTTGTCT 357 Query 44246 GTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 ||||| ||| | | ||| | |||||||||| || || ||||| | || || || Sbjct 358 TGGATCTT-TGCCTTGACGTTGTCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGT 416 Query 44305 CTTTCCCGTGAG 44316 ||| || || || Sbjct 417 CTTGCCGGTAAG 428 >seq10791 Length=597 Score = 102 bits (112), Expect = 6e-17 Identities = 153/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| |||| |||| | |||| ||||| || ||| || || |||||||| Sbjct 185 TTGCATTCCTCCTCGAAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTA 244 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||||| || || |||| |||| || || ||||||||||| | ||| || ||||| Sbjct 245 GTCGGCAAGGGTACGACCGTCTTCCAATTGTTTACCGGCAAAGATTAGACGTTGTTGATC 304 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGG 44282 || || | |||||||| || ||||| |||| | ||| | || ||||| | | Sbjct 305 TGGGGGGATTCCTTCCTTATCTTGGATCTT-AGCTTTGACGTTATCAATCGTGTCCGACG 363 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 ||||||| |||| || |||||||| || |||||| Sbjct 364 ATTCCACTTCCAGAGTGATCGTCTTACCGGTGAGG 398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359901520395186