Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq10790 143 6e-29 seq4123 140 8e-28 seq10792 136 1e-26 seq10791 131 4e-25 seq1821 86.0 2e-11 >seq10790 Length=2194 Score = 143 bits (158), Expect = 6e-29 Identities = 147/188 (78%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 |||||||| || ||||||||||| || || ||| | ||||||||||| ||||||||| Sbjct 1947 CTCACAGGCAAGACGATCACCCTTGAAGTTGAATCCAGTGACACCATCGATAACGTCAAA 1888 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 || ||||| ||||| ||||| ||||| || || |||||||| || || |||||||| Sbjct 1887 GCGAAAATTCAAGACAAGGAAGGTATCCCCCCTGATCAGCAACGTCTCATTTTCGCCGGC 1828 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAAAGAATCAACACT 178120 || || ||||||||||| | || |||| |||| || ||| |||| || ||||| || || Sbjct 1827 AAGCAACTCGAAGATGGCCGTAC-CTTGTCCGACTACAACATCCAGAAGGAATCCACCCT 1769 Query 178121 GCATCTTG 178128 || |||| Sbjct 1768 CCA-CTTG 1762 Score = 118 bits (130), Expect = 3e-21 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052 |||||||| ||||| || ||||| ||||||||||||||||| || || || | ||| Sbjct 2192 AACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAACAGCGTTTAATC 2133 Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112 || |||||||| || ||||||||||| | ||||| |||||||| ||| ||||||| || Sbjct 2132 TTTGCCGGAAAGCAACTCGAAGATGGTCGAACTCTGGCCGATTACAACATCCAAAAGGAG 2073 Query 178113 TCAACACTGCATCTTGTT 178130 || || || || || ||| Sbjct 2072 TCCACTCTTCACCTGGTT 2055 >seq4123 Length=2531 Score = 140 bits (154), Expect = 8e-28 Identities = 148/195 (76%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || |||||||||| | | || || || ||| |||||||| || |||||||| Sbjct 2384 ACCGGCAAAACGATCATCTTGGAAGTCGAGTCCTCTGACACCATTGACAACGTCAAGGCG 2325 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||||| ||||| ||||| || || || ||||||||||| | || || |||||||| Sbjct 2324 AAGATTCAAGACAAGGAAGGTATTCCCCCAGACCAGCAACGTTTGATTTTTGCCGGAAAG 2265 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || || || || || | |||||||| || || ||| |||||||||| ||||| || ||| Sbjct 2264 CAACTGGAGGACGGTCGCACTCTTGCGGACTACAACATCCAAAAAGAGTCAACCCTTCAT 2205 Query 178125 CTTGTTTTGAGACTC 178139 || ||| | ||||| Sbjct 2204 CTGGTTCTCCGACTC 2190 Score = 118 bits (130), Expect = 3e-21 Identities = 136/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 ||||||||||| || ||||| | || || || || || || || || |||||||| Sbjct 1514 CTCACAGGAAAGACCATCACTTTGGAAGTTGAGTCGTCCGATACTATTGACAACGTCAAG 1455 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| || ||||| || || || ||||| ||||| ||||| || ||||| |||||| Sbjct 1454 GCTAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAACAACGTCTCATCTTTGCCGGA 1395 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTG 178121 ||||| || ||||| || | || || ||||| || ||| |||| || || || ||||| Sbjct 1394 AAACAACTTGAAGACGGTCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCCACACTC 1335 Query 178122 CAT 178124 ||| Sbjct 1334 CAT 1332 Score = 114 bits (126), Expect = 3e-20 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || ||||| ||||| | ||||| ||| || ||||| || || |||||||| Sbjct 1224 ACTGGCAAAACCATCACTTTGGAGGTCGAATCATCGGACACTATTGACAACGTCAAGGCC 1165 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| || || || ||||||||||| ||||| || || || || ||||| || ||||| Sbjct 1164 AAGATCCAAGATAAGGAAGGAATCCCACCGGATCAACAGCGTCTAATCTTTGCTGGAAAG 1105 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || || || ||||| | ||| | |||||||| ||| | ||||| || || || || ||| Sbjct 1104 CAACTTGAGGATGGTCGAACTTTGGCCGATTACAACATTCAAAAGGAGTCCACCCTTCAT 1045 Query 178125 CTTGTT 178130 | ||| Sbjct 1044 TTGGTT 1039 Score = 113 bits (124), Expect = 1e-19 Identities = 142/191 (74%), Gaps = 3/191 (2%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 || ||||| || |||||||||||||| || ||| ||||| || || |||||||| Sbjct 930 CTTACAGGCAAGACGATCACCCTCGAAGTTGAATCTAGTGACACTATTGATAACGTCAAG 871 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 || || || ||||| || || ||||| || || |||||||| || || |||||||| Sbjct 870 GCGAAAATCCAAGACAAGGAGGGTATCCCACCTGATCAGCAACGTCTCATTTTCGCCGGC 811 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAAAGAATCAACACT 178120 || || ||||||||||| | || |||| ||||||| || |||| | ||||||| || Sbjct 810 AAGCAACTCGAAGATGGTCGTAC-CTTGTCCGATTACAATATCCAGGAGAAATCAACCCT 752 Query 178121 GCATCTTGTTT 178131 || |||| || Sbjct 751 TCA-CTTGGTT 742 Score = 107 bits (118), Expect = 5e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 || |||||||| || ||||||||||| || || ||| || |||||||| || ||||| Sbjct 2092 CTTACAGGAAAGACCATCACCCTCGAAGTCGAGTCCTCCGATACCATCGACAATGTCAAG 2033 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| || || || || || || || ||||| || || || |||||||| ||||| Sbjct 2032 GCCAAGATCCAAGATAAGGAGGGCATTCCCCCGGATCAACAGCGTCTTATCTTTGCCGGC 1973 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTG 178121 || || || || || || | || ||||| ||||| ||| | || || || || || || Sbjct 1972 AAGCAACTTGAGGACGGCCGAACCCTTGCTGATTACAACATTCAGAAGGAGTCTACCCTT 1913 Query 178122 CA 178123 || Sbjct 1912 CA 1911 >seq10792 Length=373 Score = 136 bits (150), Expect = 1e-26 Identities = 147/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || |||||||||||| | || || || ||| |||||||| || |||||||| Sbjct 225 ACCGGCAAAACGATCACCTTGGAAGTCGAGTCCTCCGACACCATTGACAACGTCAAGGCG 166 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| || ||||| ||||| ||||| || ||||||||||| | || || |||||||| Sbjct 165 AAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAGCAACGTTTGATTTTTGCCGGAAAG 106 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || || || || || | || ||||| || || ||| |||||||||| || || || ||| Sbjct 105 CAACTGGAGGACGGTCGCACCCTTGCGGACTACAACATCCAAAAAGAGTCGACCCTTCAT 46 Query 178125 CTTGTTTTGAGACTC 178139 || ||| | ||||| Sbjct 45 CTGGTTCTCCGACTC 31 >seq10791 Length=597 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 ||||| || || |||||||| || || |||||| || ||||| || || ||||||||| Sbjct 397 CTCACCGGTAAGACGATCACTCTGGAAGTGGAATCGTCGGACACGATTGATAACGTCAAA 338 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| || || || ||||||||||| || || || ||||| || ||||| ||||| Sbjct 337 GCTAAGATCCAAGATAAGGAAGGAATCCCCCCAGATCAACAACGTCTAATCTTTGCCGGT 278 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTG 178121 ||||| | ||||| || | || |||||||| || ||| | || ||||| || || || Sbjct 277 AAACAATTGGAAGACGGTCGTACCCTTGCCGACTACAACATTCAGAAAGAGTCTACCCTT 218 Query 178122 CATCTTGTTTTGAGACT 178138 ||| | ||| | |||| Sbjct 217 CATTTGGTTCTCCGACT 201 >seq1821 Length=9687 Score = 86.0 bits (94), Expect = 2e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 ||||| || || || |||||||||||||| ||| | | ||||| ||||| || ||||| Sbjct 534 CTCACCGGTAAGACCATCACCCTCGAGGTCGAATCCGCCGACACGATCGACAATGTCAAG 593 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 ||||||||| || || ||||| ||||| || ||||| || ||| Sbjct 594 ACAAAGATTCAAGAGAAGGAAGGCATCCCCCCAGACCAACAGCGA 638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203418764796052