Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1112 100 3e-16 >seq1112 Length=1085269 Score = 100 bits (110), Expect = 3e-16 Identities = 223/330 (68%), Gaps = 6/330 (2%) Strand=Plus/Minus Query 16955 AACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAA 17014 |||| || || || |||||| || | ||||||||| | ||| |||||||| || Sbjct 231498 AACAAGAGGCAAGCAAAATCGGTGTGCATTCCCTCGTCACGAGAGATCAGTTCGTTGGAG 231439 Query 17015 AATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCA 17074 ||||||| || |||||| ||| || ||||| | ||| || || | || || || || Sbjct 231438 AATGTCAGGCCAGGCATCAATCCGCGCTTCTTGAGCCAGAAAATAGAAGCAAAGGAACCG 231379 Query 17075 GAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCT 17134 || ||||| ||||||||||| | ||||| |||| | || ||||| |||| | | | Sbjct 231378 GAGAAGAAGATACCCTCGACCGCAGCAAATGCGACGAGACGCTCGGCAAACGTTGAG-CG 231320 Query 17135 TTGTTACGA-ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTC 17193 | | || ||||| || || |||| || || || | ||| ||||| || || || Sbjct 231319 ACGGTCGGAGATCCACTTGAGCGCCCAGTCAGCCTTCTTCTTGATGCACGGAATAGTCTC 231260 Query 17194 TATGGC--CTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGT 17251 ||||| | | | || ||| | || | | | || | || || || |||||||| Sbjct 231259 GATGGCATCGAACAAAAATTCACGTTGCGCGG--GCTCCTTGATGTAGGTGTCGATGAGC 231202 Query 17252 AGGCTGTACATTTCGGAGTGTATGTTCTCC 17281 | ||| |||| ||||| ||||||||| Sbjct 231201 AATGAGTAAGTTTCAGAGTGGATGTTCTCC 231172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517532240854200