Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq2 100 2e-16 seq1955 98.7 8e-16 >seq2 Length=528078 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 20972 ATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTG 21031 |||||| ||||| ||||||||||||||||| || | || |||| ||||||| ||||| Sbjct 317959 ATGCAAGGTGGATTCCTTTTGAATGTTATAATCGGACAAGGTTCTCCCGTCCTCGAGCTG 318018 Query 21032 TTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTT 21091 ||| || || |||| || | ||| ||||| || | || ||||| || || || Sbjct 318019 TTTACCAGCGAAAATGAGGCGCTGTTGGTCGGGAGGAATTCCCTCCTTATCTTGAATTTT 318078 Query 21092 TTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGT 21151 || || | | ||| || ||| | |||| || | ||| || ||||| ||||| Sbjct 318079 GGCCTTGACATTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATCGTCTTTCCGGT 318138 Query 21152 TAACGTTTTGACAAATATTTGCATT 21176 | |||||||||||||| |||||| Sbjct 318139 GAGAGTTTTGACAAATATCTGCATT 318163 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || || |||||||| | ||||| || |||| || ||||| || || Sbjct 317688 GTGGACTCCTTCTGGATATTATAGTCAGAGAGGGTGCGGCCGTCTTCGAGCTGCTTCCCA 317747 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || | ||||||||| || | || ||||| || |||||| || Sbjct 317748 GCAAAGATGAGCCGCTGCTGGTCAGGAGGAATCCCCTCCTTATCCTGAATCTTTGCCTTG 317807 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| ||| || | || || | |||||||||||||| || || || Sbjct 317808 ACATTGTCGATAGTGTCGGACGATTCGACCTCGAGTGTAATGGTCTTGCCCGTCAAAGTC 317867 Query 21159 TTGACAAATATTTGCATT 21176 |||||||| || |||||| Sbjct 317868 TTGACAAAGATCTGCATT 317885 >seq1955 Length=526780 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || ||||||||||| || || ||||||| ||||| || | ||||| || |||||||| Sbjct 127998 GTCGACTCCTTTTGGATATTGTAGTCCGAAAGGGTACGGCCATCCTCGAGTTGTTTGCCA 127939 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | ||||| | || ||||| || | |||||||||||| |||||| ||| Sbjct 127938 GCAAAGATAAGACGTTGTTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 127879 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| || || | ||| |||| || ||||||||||| || | || Sbjct 127878 ACATTGTCGATTGTGTCCGAAGACTCAACCTCCAACGTGATGGTCTTGCCCGTGAGGGTC 127819 Query 21159 TTGACAAATATTTGCAT 21175 |||||||| || ||||| Sbjct 127818 TTGACAAAGATCTGCAT 127802 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 20978 AGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCC 21037 |||||||||||| || || ||||| || | || || || ||||||| || || ||||| Sbjct 127488 AGTGGACTCCTTCTGGATATTATAATCAGACAACGTACGGCCGTCCTCGAGTTGCTTGCC 127429 Query 21038 CGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTT 21097 || |||| || | |||||||| || | ||| |||||||| |||||| || Sbjct 127428 AGCGAAAATGAGACGTTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTGGATCTTGGCCTT 127369 Query 21098 CACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGT 21157 || | | ||| ||||| | ||| || | ||| || ||||||||||| || || Sbjct 127368 GACGTTGTCGATGGTATCCGACGACTCGACCTCGAGGGTGATAGTCTTGCCGGTCAAGGT 127309 Query 21158 TTTGACAAATATTTGCAT 21175 |||||||| |||||||| Sbjct 127308 CTTGACAAAGATTTGCAT 127291 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || || | ||| | ||| ||||| || ||||| || ||||||| || || || | ||| Sbjct 127785 AGGACGAGATGGAGAGTCGACTCTTTCTGAATATTGTAGTCCGAGAGAGTGCGGCCATCC 127726 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| ||||| ||| | || || | ||||||||| || | |||||||||||| Sbjct 127725 TCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 127666 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | ||| || || | ||| ||| | || || ||| Sbjct 127665 TGGATCTTGGCCTTGACGTTATCGATCGTGTCGGACGACTCGACTTCGAGAGTGATAGTC 127606 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || |||||||| |||||||| Sbjct 127605 TTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 127574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422248572923540