Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1112 149 6e-31 seq1955 138 1e-27 seq2 122 9e-23 seq1418 91.5 2e-13 seq1296 91.5 2e-13 >seq1112 Length=1085269 Score = 149 bits (164), Expect = 6e-31 Identities = 348/536 (65%), Gaps = 57/536 (11%) Strand=Plus/Plus Query 116726 AACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGC 116785 ||||||||||||||||| |||||| ||||| ||||| |||||||| ||| || || Sbjct 230977 AACGACAACGAGCGCCACTTCATCTCCCACGTCCTGGCTTTTTTCGCTGCCTCTGATGGA 231036 Query 116786 ATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGG 116845 || || || || ||| ||||||| |||||| | | || || || | || ||||| || Sbjct 231037 ATTGTAAATGAAAATTTGGTCGAACGTTTCAGTAACGAAGTTCAAGCCGCAGAGGCTCGA 231096 Query 116846 TGCTTCTACGGCTTTCAGATC-------------GC----------------CAT----- 116871 |||||||| || || |||||| || ||| Sbjct 231097 TGCTTCTATGGTTTCCAGATCATGATGTCAGTACGCTCTAACCGTCTCCCCGCATTTTAC 231156 Query 116872 ---------------GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916 ||||||| | ||||| |||| || || ||||||||||| || Sbjct 231157 TGATACCGTATTTAGGGAGAACATCCACTCTGAAACTTACTCATTGCTCATCGACACCTA 231216 Query 116917 CGT----GCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGT 116972 | | | || | | | ||| | ||||| | ||||||||||| || |||| Sbjct 231217 CATCAAGGAGCCCGCGCAACGTGAATTT----TTGTTCGATGCCATCGAGACTATTCCGT 231272 Query 116973 GCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCG 117032 || |||| ||||||| || |||||||| |||||| ||| | | | | || | Sbjct 231273 GCATCAAGAAGAAGGCTGACTGGGCGCTCAAGTGGATCTCCGACCGTCGCTCAACGTTTG 231332 Query 117033 GCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCG 117092 |||||| || || || || || || |||||||| ||||||| || || || || Sbjct 231333 CCGAGCGTCTCGTCGCATTTGCTGCGGTCGAGGGTATCTTCTTCTCCGGTTCCTTTGCTT 231392 Query 117093 CCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCA 117152 | || || ||||||||||| ||||| | ||||| |||||||| ||| |||||| || | Sbjct 231393 CTATTTTCTGGCTCAAGAAGCGCGGATTGATGCCTGGCCTGACATTCTCCAACGAACTGA 231452 Query 117153 TCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208 |||| | |||||||| |||| ||| ||||| || | ||||| |||||| Sbjct 231453 TCTCTCGTGACGAGGGAATGCACACCGATTTTGCTTGCCTCTTGTTCTCTCATTTG 231508 >seq1955 Length=526780 Score = 138 bits (152), Expect = 1e-27 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||||||||| ||||||||| |||| ||||| || | Sbjct 128311 ATGCAGATTTTCGTCAAGACTCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCT 128370 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| |||||| ||||| | ||||| ||||||||||| | || || Sbjct 128371 GACACGATTGACAACG-TCAAGGCGAAAATCCAGGACAAGGAGGGCATCCCTCCCGATCA 128429 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| || || || ||||| || |||| || || ||| || ||||| Sbjct 128430 GCAGCGTCTCATCTTTGCTGGAAAGCAGCTCGAGGACGGTCGTACTCTCTCGGATTACAA 128489 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||| ||| | || || || || || Sbjct 128490 CATCCAGAAAGAGTCGACCCTCCACCTTGT 128519 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| || || || | || ||||| || | Sbjct 128539 ATGCAGATTTTCGTCAAGACGCTTACCGGCAAGACTATTACGTTGGAAGTCGAGTCCTCG 128598 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| | |||| || |||| || || ||||| ||||| | ||||| Sbjct 128599 GACACGATTGATAACG-TGAAGGCGAAGATTCAAGATAAGGAGGGAATCCCACCCGACCA 128657 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||| | |||| || ||||| ||||| || || | ||||||||| ||| ||||| Sbjct 128658 GCAGCGATTGATCTTTGCCGGCAAGCAGCTCGAAGATGGGCGCACCCTTTCCGATTACAA 128717 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||| |||||| ||| || || | || ||||| Sbjct 128718 CATCCAAAAGGAGAGCACCCTTCACTTGGTCTTGCG 128753 Score = 114 bits (126), Expect = 1e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || || || || ||||| |||| |||||| | | Sbjct 128030 ATGCAAATCTTCGTCAAGACCTTGACTGGGAAGACTATCACTCTCGAGGTCGAATCTTCG 128089 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || |||| ||||| || ||||| || | || || Sbjct 128090 GACACCATTGACAACG-TCAAGGCTAAGATTCAGGACAAGGAAGGCATTCCTCCCGATCA 128148 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||||| || ||||| ||||| || || | ||||| | ||||||||| Sbjct 128149 GCAACGCCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGTTGTCCGACTACAA 128208 Query 40869 CATCCAGAAGGA 40880 |||||||||||| Sbjct 128209 CATCCAGAAGGA 128220 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || | || ||||| || |||||| |||| ||||| | | Sbjct 127291 ATGCAAATCTTTGTCAAGACCTTGACCGGCAAGACTATCACCCTCGAGGTCGAGTCGTCG 127350 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| |||||| || || | ||||| |||||||| || | ||||| Sbjct 127351 GATACCATCGACAACG-TCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCCGACCA 127409 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||| | ||| ||||| || || || |||| || || | || || || Sbjct 127410 GCAACGTCTCATTTTCGCTGGCAAGCAACTCGAGGACGGCCGTACGTTGTCTGATTATAA 127469 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCT 40895 |||||||||||| |||| || || || Sbjct 127470 TATCCAGAAGGAGTCCACTCTCCACCT 127496 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||||||||| |||||||| | || || || | | Sbjct 127802 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACCATCACGTTGGAGGTTGAGTCTTCG 127861 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| || || | ||||| || ||||| || | ||||| Sbjct 127862 GACACAATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAA 127921 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || |||| || |||||||| || || || | || ||||| |||||||| Sbjct 127922 CAACGTCTTATCTTTGCTGGCAAACAACTCGAGGATGGCCGTACCCTTTCGGACTACAAT 127981 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| |||||| | || || || || || Sbjct 127982 ATCCAAAAGGAGTCGACCCTCCACCTTGT 128010 >seq2 Length=528078 Score = 122 bits (134), Expect = 9e-23 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || | |||||||| ||||| || |||| |||||| | | Sbjct 317885 AATGCAGATCTTTGTCAAGACTTTGACGGGCAAGACCATTACACTCGAGGTCGAATCGTC 317826 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| | | | |||||| ||| |||| || || ||||| || || | ||||| Sbjct 317825 CGACACTATCGACAATGTCAAGGCAAAGATTCAGGATAAGGAGGGGATTCCTCCTGACCA 317766 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| || || || ||||| || |||| ||||||||| ||||| || Sbjct 317765 GCAGCGGCTCATCTTTGCTGGGAAGCAGCTCGAAGACGGCCGCACCCTCTCTGACTATAA 317706 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCT 40895 |||||||||||| |||| || || || Sbjct 317705 TATCCAGAAGGAGTCCACCCTTCACCT 317679 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||||||||| || || || |||||| |||| ||||| || | Sbjct 317365 ATGCAGATCTTTGTGAAAACGCTCACCGGGAAGACGATCACCCTCGAGGTCGAGTCCTCT 317306 Query 40750 GACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| | |||| || || | || || || |||||||| | ||||| Sbjct 317305 GACACCATTGACAACG-TGAAGGCGAAGATCCAGGATAAGGAAGGCATCCCACCTGACCA 317247 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || ||| | |||| ||||||||| ||||| || |||| ||||| || || || || Sbjct 317246 ACAGCGATTGATCTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACTCTTTCGGATTATAA 317187 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || ||| | || || || Sbjct 317186 TATCCAAAAAGAGTCAACCCTCCA 317163 >seq1418 Length=35037 Score = 91.5 bits (100), Expect = 2e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 40793 GCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCA 40852 |||||||| | ||||||||||| || |||| |||||||| ||||| || |||| || | Sbjct 21844 GCATCCCCCCCGACCAGCAACGCCTGATCTTTGCGGGCAAGCAGCTCGAGGACGGACGTA 21785 Query 40853 CCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 | ||| ||||||||||||||||||||| | || || || Sbjct 21784 CTCTCTCGGACTACAACATCCAGAAGGAGTCGACTCTTCA 21745 >seq1296 Length=48495 Score = 91.5 bits (100), Expect = 2e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 40793 GCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCA 40852 |||||||| | ||||||||||| || |||| |||||||| ||||| || |||| || | Sbjct 4931 GCATCCCCCCCGACCAGCAACGCCTGATCTTTGCGGGCAAGCAGCTCGAGGACGGACGTA 4872 Query 40853 CCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 | ||| ||||||||||||||||||||| | || || || Sbjct 4871 CTCTCTCGGACTACAACATCCAGAAGGAGTCGACTCTTCA 4832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515205900904400