Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1955 98.7 8e-16 seq2 96.9 3e-15 >seq1955 Length=526780 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || ||||||||||| || |||||||| ||| || ||| | || Sbjct 128750 AAGACCAAGTGAAGGGTGCTCTCCTTTTGGATGTTGTAATCGGAAAGGGTGCGCCCATCT 128691 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || || ||||| || ||||| ||||| |||||||| || | |||||||| || Sbjct 128690 TCGAGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCGGGTGGGATTCCCTCCTTATCT 128631 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| || ||| || | | ||||| ||| || |||| ||||| ||| Sbjct 128630 TGAATCTTCGCCTTCACGTTATCAATCGTGTCCGAGGACTCGACTTCCAACGTAATAGTC 128571 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| || || ||||| || || || ||||| Sbjct 128570 TTGCCGGTAAGCGTCTTGACGAAAATCTGCAT 128539 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||| || || |||||||| || || | || || |||||||| || || || Sbjct 127993 CTCCTTTTGGATATTGTAGTCCGAAAGGGTACGGCCATCCTCGAGTTGTTTGCCAGCAAA 127934 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | || |||||||||||||| | || ||||||||| || || ||| || Sbjct 127933 GATAAGACGTTGTTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATT 127874 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | ||||| | ||| ||||||| || || ||||||||||| || ||||| || Sbjct 127873 GTCGATTGTGTCCGAAGACTCAACCTCCAACGTGATGGTCTTGCCCGTGAGGGTCTTGAC 127814 Query 45325 AAAGATTTGCAT 45336 |||||| ||||| Sbjct 127813 AAAGATCTGCAT 127802 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||| ||||| |||||||| || || ||| |||| || || || ||||| || || Sbjct 128502 CTCTTTCTGGATGTTGTAATCCGAGAGAGTACGACCGTCCTCGAGCTGCTTTCCAGCAAA 128443 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||| || |||||||| | |||||||||||| ||||| ||| | || Sbjct 128442 GATGAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATTTTCGCCTTGA-CGT 128384 Query 45265 CGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCA 45323 | || | |||| ||| ||||| | ||| || ||||||||||| |||||||| | Sbjct 128383 TGTCAATCGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGAGTCTTGA 128324 Query 45324 CAAAGATTTGCATG 45337 | || || |||||| Sbjct 128323 CGAAAATCTGCATG 128310 >seq2 Length=528078 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/213 (71%), Gaps = 5/213 (2%) Strand=Plus/Plus Query 45127 TACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCA--GTTGGCGATCGTC 45183 |||| || |||| ||| ||||| |||||||| || ||| || ||| | |||| Sbjct 317952 TACCTAGATGCAAGGTGGATTCCTTTTGAATGTTATAATCGGACAAGGTTCTCC--CGTC 318009 Query 45184 GTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 || || ||||| || ||||| || | ||||||||||||||||| | |||||||| || Sbjct 318010 CTCGAGCTGTTTACCAGCGAAAATGAGGCGCTGTTGGTCGGGAGGAATTCCCTCCTTATC 318069 Query 45244 CGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 |||||| ||| || | | | |||| | ||||||||| | ||| ||||| Sbjct 318070 TTGAATTTTGGCCTTGACATTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATCGT 318129 Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| || || ||||| || ||||| || ||||| Sbjct 318130 CTTTCCGGTGAGAGTTTTGACAAATATCTGCAT 318162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395065257068365