Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1955 122 8e-23 seq424 113 4e-20 seq2 109 5e-19 >seq1955 Length=526780 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || |||||||| || ||||| || ||||| |||| || || |||| Sbjct 127573 CATGCAAATCTTTGTCAAGACTCTTACTGGCAAGACTATCACTCTCGAAGTCGAGTCGTC 127632 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | ||||| | || ||||||||||||| | || || ||||| Sbjct 127633 CGACACGATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCA 127692 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || |||||||| ||| | || || ||| | || || || Sbjct 127693 GCAGCGCCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTCTCGGACTACAA 127752 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| ||||| |||||||| ||||| || ||| | || | ||||||| Sbjct 127753 TATTCAGAAAGAGTCGACTCTCCATCTCGTCCTTCGTCTCCGTGGCGGTA 127802 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| |||||||| || ||||| || |||||| |||| || || | || Sbjct 128310 CATGCAGATTTTCGTCAAGACTCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTC 128369 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || ||| ||||||||| ||| | || ||||| || Sbjct 128370 TGACACGATTGACAACGTCAAGGCGAAAATCCAGGACAAGGAGGGCATCCCTCCCGATCA 128429 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || ||||| || ||| | || ||| | ||| | ||||| || Sbjct 128430 GCAGCGTCTCATCTTTGCTGGAAAGCAGCTCGAGGACGGTCGTACTCTCTCGGATTACAA 128489 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || ||||| ||||| || || || || || | || | ||||||| Sbjct 128490 CATCCAGAAAGAGTCGACCCTCCACCTTGTCCTCCGTCTCCGTGGCGGTA 128539 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/216 (70%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || ||||||||| || || ||||| |||| ||||| || |||||| |||| || || | Sbjct 127287 AATCATGCAAATCTTTGTCAAGACCTTGACCGGCAAGACTATCACCCTCGAGGTCGAGTC 127346 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||| || | |||| | ||||| | || |||||||| ||| | || ||||| Sbjct 127347 GTCGGATACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCCGA 127406 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 |||||| ||||| || ||||||||||| || | || ||| || || ||||| Sbjct 127407 CCAGCAACGTCTCATTTTCGCTGGCAAGCAACTCGAGGACGGCCGTACGTTGTCTGATTA 127466 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATC-TGGTAC 31403 ||| || || || || || ||||| || | |||||| Sbjct 127467 TAATATCCAGAAGGAGTCCACTCTCCACCTTGGTAC 127502 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| |||| || || || ||||| |||| || ||| | || Sbjct 128030 ATGCAAATCTTCGTCAAGACCTTGACTGGGAAGACTATCACTCTCGAGGTCGAATCTTCG 128089 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||||||||||||| | || ||||| ||| Sbjct 128090 GACACCATTGACAACGTCAAGGCTAAGATTCAGGACAAGGAAGGCATTCCTCCCGATCAG 128149 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || || || || || ||||| ||| | || || || || ||| || ||| Sbjct 128150 CAACGCCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGTTGTCCGACTACAAC 128209 Query 31373 ATTCAAAAAGAATCGACTCTTCATC-TGGTAC 31403 || || || |||||||| ||||| | |||||| Sbjct 128210 ATCCAGAAGGAATCGACCCTTCACCTTGGTAC 128241 >seq424 Length=76155 Score = 113 bits (124), Expect = 4e-20 Identities = 152/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 23357 AAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCG 23416 || ||||| || ||||| || || ||||||| ||||| || || || || ||||| || Sbjct 60160 AAGAGATCGGGGATCCAGAGCGCATAGAACAAGTCGCGCGCACGAACTTCTTCTTTTCCA 60101 Query 23417 GTGTTCTTTTTC--AAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAA 23474 || | |||| | | ||| | || || ||||| |||| ||||||||||||||||| | Sbjct 60100 -TGAT-TTTTACGGAGATCGAGGAATTCGAACACATCCGAGTGCCACGGCTCGAGGTAGA 60043 Query 23475 CGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGT 23534 || || ||||| |||| ||| || || || || ||||| ||||| ||||| | || Sbjct 60042 TAGCGAATGCGCCAGGTCGCTTGTTACCACCTTGGTCGACATAACGAGCCGTTGCATCGT 59983 Query 23535 ACACTCTTAGCATCGGCACGAGACCGTT 23562 | | | ||||| ||||||| |||||| Sbjct 59982 AGGCACGCAGCATGGGCACGATACCGTT 59955 >seq2 Length=528078 Score = 109 bits (120), Expect = 5e-19 Identities = 163/230 (71%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || ||||| || || || ||||||||| |||| || || | || Sbjct 318162 ATGCAGATATTTGTCAAAACTCTCACCGGAAAGACGATCACCCTCGAGGTGGAGTCTTCT 318103 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | ||| || ||||| || | || |||||||| Sbjct 318102 GACACCATCGACAATGTCAAGGCCAAAATTCAAGATAAGGAGGGAATTCCTCCCGACCAA 318043 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || |||||||| |||||| | || ||| | || || |||||||||| Sbjct 318042 CAGCGCCTCATTTTCGCTGGTAAACAGCTCGAGGACGGGAGAACCTTGTCCGATTATAAC 317983 Query 31373 ATTCAAAAAGAATCGACTCTTCATCT-GGTACTTAGACTGAGGGGCGGTA 31421 |||||||| ||||| || | ||||| ||||| | | ||| ||| ||| Sbjct 317982 ATTCAAAAGGAATCCACCTTGCATCTAGGTACGTCAATCGAGAGGCTGTA 317933 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| |||||| |||| || || || || || | || || ||| |||| Sbjct 317594 CATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACTATTACTCTTGAGGTCGAATCGTC 317535 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || | |||||| || || ||||||||||||| | || || ||||| Sbjct 317534 TGATACCATTGACAATGTCAAAGCGAAGATTCAGGACAAGGAAGGCATCCCTCCTGACCA 317475 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || ||||| || || || | || ||| | ||| || || || || Sbjct 317474 GCAGCGGCTCATCTTCGCCGGGAAGCAACTTGAGGACGGCAGGACATTGTCTGACTACAA 317415 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| || ||||| | ||||| || ||| | || | || |||| Sbjct 317414 TATCCAAAAGGAGTCGACGTTGCATCTTGTCCTTCGCCTACGCGGTGGTA 317365 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||| |||| ||||| || || || |||| || ||| ||||| Sbjct 317884 ATGCAGATCTTTGTCAAGACTTTGACGGGCAAGACCATTACACTCGAGGTCGAATCGTCC 317825 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| | ||||| || ||| | ||| ||||| || | || || ||||| Sbjct 317824 GACACTATCGACAATGTCAAGGCAAAGATTCA-GGATAAGGAGGGGATTCCTCCTGACCA 317766 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||| || || || ||||| || ||| | |||||| Sbjct 317765 GCAGCGGCTCATCTTTGCTGGGAAGCAGCTCGAAGAC 317729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445754893654800