Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2 111 2e-19 seq1955 107 2e-18 >seq2 Length=528078 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || || |||||||||||||||||| || || ||| ||| ||||||||||||||| Sbjct 317966 GTGGATTCCTTTTGAATGTTATAATCGGACAAGGTTCTCCCGTCCTCGAGCTGTTTACCA 318025 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 || | || || || || || |||||||| || || || || || ||| |||| | || Sbjct 318026 GCGAAAATGAGGCGCTGTTGGTCGGGAGGAATTCCCTCCTTATC-TTGAATTTTGGCCTT 318084 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||| | | ||||||||| | ||| | |||||| ||||| | || Sbjct 318085 GACATTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATCGTCTTTCCGGTGAGAGT 318144 Query 139747 TTTTACGAATATTTGCAT 139764 ||| || ||||| ||||| Sbjct 318145 TTTGACAAATATCTGCAT 318162 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || ||||||||||| || |||||||| Sbjct 317139 CCACCACGGAGACGGAGCACCAAGTGGAGGGTTGACTCTTTTTGGATATTATAATCCGAA 317198 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||| || ||||| || || || |||||| || || || || || || Sbjct 317199 AGAGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAATCGCTGTTGGTCAGGTGGG 317258 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| || || ||| || || | | || | ||||| | || ||| ||| Sbjct 317259 ATGCCTTCCTTATCCTGGATCTTCGCCTTCACGTTGTCAATGGTGTCAGAGGACTCGACC 317318 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | |||||| ||||| | |||||| || || || |||||| Sbjct 317319 TCGAGGGTGATCGTCTTCCCGGTGAGCGTTTTCACAAAGATCTGCATA 317366 >seq1955 Length=526780 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||| | || | ||| | || |||||||| || ||||| ||||| Sbjct 128537 CCGCCACGGAGACGGAGGACAAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAG 128478 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| |||||||| || |||||| |||| ||||| |||||||||||||| Sbjct 128477 AGAGTACGACCGTCCTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCGGGAGGG 128418 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| |||||| || | | || | ||||| | || ||| ||| Sbjct 128417 ATGCCCTCCTTGTCCTGGATTTTCGCCTTGACGTTGTCAATCGTGTCAGAGGACTCGACC 128358 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | |||||||| || | || || ||||| || ||||| Sbjct 128357 TCGAGGGTGATGGTCTTGCCCGTGAGAGTCTTGACGAAAATCTGCAT 128311 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | |||||| || ||||||| || ||| ||||| ||||| |||||| Sbjct 128766 GCCTCCACGGAGACGCAAGACCAAGTGAAGGGTGCTCTCCTTTTGGATGTTGTAATCGGA 128707 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| | ||||||||||| || || ||| |||||| || ||||| ||||| || Sbjct 128706 AAGGGTGCGCCCATCTTCGAGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCGGGTGG 128647 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || || || || || ||| | || | || | | || | ||||| | || ||| | Sbjct 128646 GATTCCCTCCTTATC-TTGAATCTTCGCCTTCACGTTATCAATCGTGTCCGAGGACTCGA 128588 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || | || | ||||||||||| | ||| || ||||| || |||||| Sbjct 128587 CTTCCAACGTAATAGTCTTGCCGGTAAGCGTCTTGACGAAAATCTGCATA 128538 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| || || || || || ||||| || ||| || |||| || |||||||| Sbjct 128233 GTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAACGTGCGGCCATCCTCGAGCTG 128174 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || || ||| |||| || ||||||||||||||||| |||||||| ||||| ||| | | Sbjct 128173 CTTGCCGGCAAAGATGAGGCGTTGCTGATCGGGAGGAATGCCTTCCTTGTC-CTGAATCT 128115 Query 139681 TTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739 | | || | | || | ||||| | | || ||||| | || | ||||| || | Sbjct 128114 TAGCCTTGACGTTGTCAATGGTGTCCGAAGATTCGACCTCGAGAGTGATAGTCTTCCCAG 128055 Query 139740 TCAACGTTTTTACGAATATTTGCAT 139764 |||| || || ||||| |||||||| Sbjct 128054 TCAAGGTCTTGACGAAGATTTGCAT 128030 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || || |||||||| || || | ||| ||||| || || ||| Sbjct 127487 GTGGACTCCTTCTGGATATTATAATCAGACAACGTACGGCCGTCCTCGAGTTGCTTGCCA 127428 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || | || ||||||||||| |||||||| ||||| || ||||| ||| || || Sbjct 127427 GCGAAAATGAGACGTTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTG 127368 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | || || | | ||| ||||| | ||| | |||||||||||||| || Sbjct 127367 ACGTTGTCGATGGTATCCGACGACTCGACCTCGAGGGTGATAGTCTTGCCGGTCAAGGTC 127308 Query 139748 TTTACGAATATTTGCAT 139764 || || || |||||||| Sbjct 127307 TTGACAAAGATTTGCAT 127291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496051195348000