Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1112 116 5e-21 >seq1112 Length=1085269 Score = 116 bits (128), Expect = 5e-21 Identities = 172/239 (72%), Gaps = 5/239 (2%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || |||||| ||||| |||||||| | | || ||||||||||| || || || Sbjct 231489 CAAGCAAAATCGGTGTGCATTCCCTCGTCACGAGAGATCAGTTCGTTGGAGAATGTCAGG 231430 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 || ||||| | || ||||| || ||||| || || || ||||| || || || |||||| Sbjct 231429 CCAGGCATCAATCCGCGCTTCTTGAGCCAGAAAATAGAAGCAAAGGAACCGGAGAAGAAG 231370 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAAC--TG-GCG-CTGTCATG 50135 || || || || || ||||| || || || | ||| || ||| || ||| | ||| Sbjct 231369 ATACCCTCGACCGCAGCAAATGCGACGAGACGCTCGGCA-AACGTTGAGCGACGGTCGGA 231311 Query 50136 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 50194 |||||||| | ||||| || |||||||| || | || || || || || ||||||| Sbjct 231310 GATCCACTTGAGCGCCCAGTCAGCCTTCTTCTTGATGCACGGAATAGTCTCGATGGCAT 231252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718250259686600