Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1955 105 7e-18 seq2 87.8 2e-12 >seq1955 Length=526780 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| || ||||| || || |||||||| ||| || |||| || ||||| || Sbjct 128232 TGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAACGTGCGGCCATCCTCGAGCTGC 128173 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 || || ||| |||| || ||||||||||||||||| |||||||| ||||| ||| || Sbjct 128172 TTGCCGGCAAAGATGAGGCGTTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGAATCTTA 128113 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 || | | || | ||||||| | ||| || || | ||| | ||||| || ||| Sbjct 128112 GCCTTGACGTTGTCAATGGTGTCCGAAGATTCGACCTCGAGAGTGATAGTCTTCCCAGTC 128053 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 || || || ||||| |||||||| Sbjct 128052 AAGGTCTTGACGAAGATTTGCAT 128030 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | |||||| || || |||| || || ||||| |||||||||||| Sbjct 128766 GCCTCCACGGAGACGCAAGACCAAGTGAAGGGTGCTCTCCTTTTGGATGTTGTAATCGGA 128707 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| | |||||||| || || || ||| |||||| || ||||| ||||| || Sbjct 128706 AAGGGTGCGCCCATCTTCGAGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCGGGTGG 128647 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || || || ||| || || | | || | |||||||| || || || Sbjct 128646 GATTCCCTCCTTATCTTGAATCTTCGCCTTCACGTTATCAATCGTGTCCGAGGACTCGAC 128587 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||| | || | ||||||||||| | || || ||||| || |||||| Sbjct 128586 TTCCAACGTAATAGTCTTGCCGGTAAGCGTCTTGACGAAAATCTGCATA 128538 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || ||||| || ||||||||||| | || | ||| ||||| || || ||| Sbjct 128507 GTCGACTCTTTCTGGATGTTGTAATCCGAGAGAGTACGACCGTCCTCGAGCTGCTTTCCA 128448 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||| ||||| |||||||||||||| ||||| || ||||| ||||| || Sbjct 128447 GCAAAGATGAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATTTTCGCCTTG 128388 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||| | || || || || | || | |||||||| || | || Sbjct 128387 ACGTTGTCAATCGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGAGTC 128328 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 128327 TTGACGAAAATCTGCAT 128311 >seq2 Length=528078 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 142977 CTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGA 143036 ||| ||| | || ||||| ||||| ||||| |||||| || || ||| ||| |||| Sbjct 317955 CTAGATGCAAGGTGGATTCCTTTTGAATGTTATAATCGGACAAGGTTCTCCCGTCCTCGA 318014 Query 143037 GTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAA 143096 | ||||||||||| | || || || || || |||||||| || || || || || || Sbjct 318015 GCTGTTTACCAGCGAAAATGAGGCGCTGTTGGTCGGGAGGAATTCCCTCCTTATCTTGAA 318074 Query 143097 TTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGC 143156 |||| || | | || | ||||| | | || || || | || | |||||| | Sbjct 318075 TTTTGGCCTTGACATTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATCGTCTTTC 318134 Query 143157 CGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| | ||||| || ||||| ||||| Sbjct 318135 CGGTGAGAGTTTTGACAAATATCTGCAT 318162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507001312690800