Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2 159 8e-34 seq1955 136 9e-27 seq1901 87.8 4e-12 seq1724 87.8 4e-12 seq1211 86.0 1e-11 >seq2 Length=528078 Score = 159 bits (176), Expect = 8e-34 Identities = 154/198 (78%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| |||||||||||||| || || | |||||||| || || || ||| Sbjct 317688 GTGGACTCCTTCTGGATATTATAGTCAGAGAGGGTGCGGCCGTCTTCGAGCTGCTTCCCA 317747 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||| ||| || |||||||| || || || ||||||||||||||||| || Sbjct 317748 GCAAAGATGAGCCGCTGCTGGTCAGGAGGAATCCCCTCCTTATCCTGAATCTTTGCCTTG 317807 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | || ||| | ||| ||||| |||||||| ||||| || || | || Sbjct 317808 ACATTGTCGATAGTGTCGGACGATTCGACCTCGAGTGTAATGGTCTTGCCCGTCAAAGTC 317867 Query 104543 TTTACAAATATCTGCATT 104560 || ||||| ||||||||| Sbjct 317868 TTGACAAAGATCTGCATT 317885 Score = 156 bits (172), Expect = 1e-32 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 104352 CTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTA 104411 ||||||| || || ||||| || ||||| ||||| || || | ||||| ||||| || | Sbjct 317955 CTAGATGCAAGGTGGATTCCTTTTGAATGTTATAATCGGACAAGGTTCTCCCGTCCTCGA 318014 Query 104412 GTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAA 104471 | ||||| ||||| ||||| || | |||||| || ||||| ||||| || ||||| |||| Sbjct 318015 GCTGTTTACCAGCGAAAATGAGGCGCTGTTGGTCGGGAGGAATTCCCTCCTTATCTTGAA 318074 Query 104472 TCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTAC 104531 | || || || ||||| || | ||| || || || ||||| || || || ||||| | Sbjct 318075 TTTTGGCCTTGACATTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATCGTCTTTC 318134 Query 104532 CAGTAAGTGTTTTTACAAATATCTGCATT 104560 | || || ||||| ||||||||||||||| Sbjct 318135 CGGTGAGAGTTTTGACAAATATCTGCATT 318163 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || | ||| | ||| || ||||| || || || || || || ||||| |||||| Sbjct 317364 ATACCACCGCGTAGGCGAAGGACAAGATGCAACGTCGACTCCTTTTGGATATTGTAGTCA 317423 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || || ||||| || ||||| || || || || || |||| ||| || |||||| Sbjct 317424 GACAATGTCCTGCCGTCCTCAAGTTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCAGGA 317483 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||||||||| ||||| ||||| || | |||||| | ||| Sbjct 317484 GGGATGCCTTCCTTGTCCTGAATCTTCGCTTTGACATTGTCAATGGTATCAGACGATTCG 317543 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || ||||||||||| || || | || || || || |||||||| Sbjct 317544 ACCTCAAGAGTAATAGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 317593 >seq1955 Length=526780 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || || |||||||||||||| ||||| || ||||| | || || Sbjct 127786 AAGGACGAGATGGAGAGTCGACTCTTTCTGAATATTGTAGTCCGAGAGAGTGCGGCCATC 127727 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || |||||||| || || | ||| || |||||||| || ||||| || || Sbjct 127726 CTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCAGGAGGAATGCCTTCCTTGTC 127667 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| ||||| || || || || || | || ||| | || || || || || ||||| Sbjct 127666 CTGGATCTTGGCCTTGACGTTATCGATCGTGTCGGACGACTCGACTTCGAGAGTGATAGT 127607 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| |||||||| || || ||||| || ||||| Sbjct 127606 CTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 127574 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| || || ||||| || | || | || || || || || || || Sbjct 128226 GTCGATTCCTTCTGGATGTTGTAGTCGGACAACGTGCGGCCATCCTCGAGCTGCTTGCCG 128167 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | || ||||| ||||| || ||||| || ||||||||||| || || Sbjct 128166 GCAAAGATGAGGCGTTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGAATCTTAGCCTTG 128107 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || || ||| ||||| || || |||||||| ||||| | || Sbjct 128106 ACGTTGTCAATGGTGTCCGAAGATTCGACCTCGAGAGTGATAGTCTTCCCAGTCAAGGTC 128047 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 128046 TTGACGAAGATTTGCAT 128030 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || || || || ||||| | |||||| || || || |||||| Sbjct 128507 GTCGACTCTTTCTGGATGTTGTAATCCGAGAGAGTACGACCGTCCTCGAGCTGCTTTCCA 128448 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| ||||| ||||| || || || || ||||| || || || || Sbjct 128447 GCAAAGATGAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATTTTCGCCTTG 128388 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || || | || ||||| || || || ||||| || || || || Sbjct 128387 ACGTTGTCAATCGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGAGTC 128328 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 128327 TTGACGAAAATCTGCAT 128311 Score = 87.8 bits (96), Expect = 4e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || || || || || || || || || || | || ||||| || || || || ||||| Sbjct 128729 TCCTTTTGGATGTTGTAATCGGAAAGGGTGCGCCCATCTTCGAGCTGCTTGCCGGCAAAG 128670 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || | | ||| || || || || ||||| || ||||| |||||||| || || || || Sbjct 128669 ATCAATCGCTGCTGGTCGGGTGGGATTCCCTCCTTATCTTGAATCTTCGCCTTCACGTTA 128610 Query 104489 TCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTAC 104547 || | || || | ||| || || || | ||||||||||| || ||||| || || || Sbjct 128609 TCAATCGTGTC-CGAGGACTCGACTTCCAACGTAATAGTCTTGCCGGTAAGCGTCTTGAC 128551 Query 104548 AAATATCTGCAT 104559 || |||||||| Sbjct 128550 GAAAATCTGCAT 128539 >seq1901 Length=11604 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 104434 CCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTAC 104493 || ||| || || || || || || || ||||| |||||||| || || ||||| || | Sbjct 8391 CCGCTGCTGGTCGGGGGGGATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTGTCGAT 8450 Query 104494 GGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATAT 104553 |||||| || ||| ||||| || || || ||||| || || || ||||| || ||||| Sbjct 8451 AGTATCGGAAGATTCCACCTCAAGGGTGATCGTCTTCCCCGTTAGGGTTTTGACGAATAT 8510 Query 104554 CTGCAT 104559 |||||| Sbjct 8511 CTGCAT 8516 >seq1724 Length=14637 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 104434 CCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTAC 104493 || ||| || || || || || || || ||||| |||||||| || || ||||| || | Sbjct 11416 CCGCTGCTGGTCGGGGGGGATACCCTCCTTATCTTGAATCTTGGCCTTAACATTGTCGAT 11475 Query 104494 GGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATAT 104553 |||||| || ||| ||||| || || || ||||| || || || ||||| || ||||| Sbjct 11476 AGTATCGGAAGATTCCACCTCAAGGGTGATCGTCTTCCCCGTTAGGGTTTTGACGAATAT 11535 Query 104554 CTGCAT 104559 |||||| Sbjct 11536 CTGCAT 11541 >seq1211 Length=59824 Score = 86.0 bits (94), Expect = 1e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| |||| ||| | ||| ||||| ||||| || ||||| ||||| || || | ||| Sbjct 9438 AAGGACTAAATGGAGTGTCGATTCCTTCTGGATGTTATAATCAGACAGCGTCCGCGGGTC 9497 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| || ||||| ||||| || || ||||| ||||||||||| || | || |||| | Sbjct 9498 TTCGAGCTGTTTCCCAGCGAATATGAGCCTTTGTTGATCAGGTGGCACACCCTCTTCTGC 9557 Query 104467 CTGAATC 104473 |||||| Sbjct 9558 TTGAATC 9564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151367936517020