Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq2 111 1e-19 seq1955 100 3e-16 >seq2 Length=528078 Score = 111 bits (122), Expect = 1e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 94805 TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGT 94864 ||||| || ||||||||||| | |||||||||| || || | ||||| |||||| Sbjct 317960 TGCAAGGTGGATTCCTTTTGAATGTTATAATCGGACAAGGTTCTCCCGTCCTCGAGCTGT 318019 Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 || || | || || | | || || || |||||||| || || || || | |||||| Sbjct 318020 TTACCAGCGAAAATGAGGCGCTGTTGGTCGGGAGGAATTCCCTCCTTATCTTGAATTTTG 318079 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 |||||||| | ||| ||||||| || || || | ||||| || ||||| || Sbjct 318080 GCCTTGACATTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATCGTCTTTCCGGTG 318139 Query 94985 AGAGTTTTCACAAAGATCTGCATGCT 95010 |||||||| ||||| |||||||| || Sbjct 318140 AGAGTTTTGACAAATATCTGCATTCT 318165 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | || || || ||||| | |||||||| | |||| ||||| Sbjct 317156 CACCAAGTGGAGGGTTGACTCTTTTTGGATATTATAATCCGAAAGAGTGCGACCGTCCTC 317215 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || || | ||||| |||| || || || || || || ||||| || || | Sbjct 317216 AAGCTGCTTGCCCGCGAAGATCAATCGCTGTTGGTCAGGTGGGATGCCTTCCTTATCCTG 317275 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||||| ||| | | | ||||||| | ||||| || | ||||| || || Sbjct 317276 GATCTTCGCCTTCACGTTGTCAATGGTGTCAGAGGACTCGACCTCGAGGGTGATCGTCTT 317335 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || |||||||||||||||||||| Sbjct 317336 CCCGGTGAGCGTTTTCACAAAGATCTGCAT 317365 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || ||||| || || ||||||| | | ||||| || |||||||| || || || Sbjct 317730 TCTTCGAGCTGCTTCCCAGCAAAGATGAGCCGCTGCTGGTCAGGAGGAATCCCCTCCTTA 317789 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| ||||||||||| | ||| |||||| | ||||| || | || ||| Sbjct 317790 TCCTGAATCTTTGCCTTGACATTGTCGATAGTGTCGGACGATTCGACCTCGAGTGTAATG 317849 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || | ||| || |||||||||||||| Sbjct 317850 GTCTTGCCCGTCAAAGTCTTGACAAAGATCTGCAT 317884 Score = 82.4 bits (90), Expect = 7e-11 Identities = 145/210 (69%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCA 94859 |||| ||||| || || |||||||| | || || || || || || ||||| | Sbjct 317386 CAAGATGCAACGTCGACTCCTTTTGGATATTGTAGTCAGACAATGTCCTGCCGTCCTCAA 317445 Query 94860 GCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAA 94919 | || || ||| | ||||| | | ||||| || ||||| || ||||| ||||| | || Sbjct 317446 GTTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGAA 317505 Query 94920 TTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTC 94979 | || || ||||| | | | || |||| ||||| |||| || || || |||| Sbjct 317506 TCTTCGCTTTGACATTGTCAATGGTATCAGACGATTCGACCTCAAGAGTAATAGTCTTTC 317565 Query 94980 CAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || | ||| || || ||||||||||||| Sbjct 317566 CGGTCAAAGTCTTGACGAAGATCTGCATGC 317595 >seq1955 Length=526780 Score = 100 bits (110), Expect = 3e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| ||||| || || ||||||| | | ||||| || |||||||| ||||| || Sbjct 127729 ATCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCAGGAGGAATGCCTTCCTT 127670 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || ||||||||| ||| ||||| | ||||| || | ||||| Sbjct 127669 GTCCTGGATCTTGGCCTTGACGTTATCGATCGTGTCGGACGACTCGACTTCGAGAGTGAT 127610 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || ||||||||||| || |||||||| ||||||| Sbjct 127609 AGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCATGC 127572 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| || ||||| || ||||||| | | ||| || || |||||||| ||||| || Sbjct 127957 ATCCTCGAGTTGTTTGCCAGCAAAGATAAGACGTTGTTGGTCGGGAGGAATGCCTTCCTT 127898 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || ||||| || | ||| ||||| | || || || | |||||| Sbjct 127897 GTCCTGGATCTTGGCCTTCACATTGTCGATTGTGTCCGAAGACTCAACCTCCAACGTGAT 127838 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || || || || || |||||||||||||| Sbjct 127837 GGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 127802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448279628483400