Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq113 136 6e-28 seq1778 118 2e-22 seq557 116 6e-22 >seq113 Length=508357 Score = 136 bits (150), Expect = 6e-28 Identities = 117/142 (82%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||| ||||| ||||| || |||||||| || || ||||| || ||||| Sbjct 179241 GCTAAGCGTCATCGCAAGATC-CTTCGCGACAACATCCAGGGTATTACCAAACCTGCTAT 179299 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||||||||||||||||| ||||||||| |||| || ||| | || || |||| Sbjct 179300 TCGTCGTCTGGCTCGTCGTGGTGGTGTCAAGCGTATCTCGGGCTTGATATACGAGGAGAC 179359 Query 16552 TCGTGATGTTTTGAAGATCTTC 16573 |||| ||| | ||||| ||| Sbjct 179360 CCGTGGTGTCCTCAAGATTTTC 179381 >seq1778 Length=111838 Score = 118 bits (130), Expect = 2e-22 Identities = 114/144 (79%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||||||| ||||| | || || |||||||| || || || || || ||||| Sbjct 22205 GCTAAGCGTCATCGCAAGATCT-TGCGCGACAACATCCAGGGTATTACTAAACCCGCTAT 22147 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| ||||| || ||||| ||||||||| ||||||| | |||| || |||| Sbjct 22146 CCGTCGTCTTGCTCGCCGAGGTGGTGTCAAGCGTATCTCTGGTCTCATCTACGAGGAGAC 22087 Query 16552 TCGTGATGTTTTGAAGATCTTCCT 16575 |||| || | ||||| ||||| Sbjct 22086 CCGTGGCGTGCTCAAGATTTTCCT 22063 >seq557 Length=359786 Score = 116 bits (128), Expect = 6e-22 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || ||||| |||| | ||||| || ||||||||||| ||||||||||| || || Sbjct 83339 CGCCAAACGTCACCGCAAAATCCTTCGCGACAACATCCAAGGCATCACCAAGCCTGCGAT 83280 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| ||||| |||||||| ||||| ||| | || || | |||| || |||| Sbjct 83279 CCGTCGTCTCGCTCGCCGTGGTGGTGTCAAACGTATTTCGGGGCTTATCTACGAGGAGAC 83220 Query 16552 TCGTGATGTTTTGAAGATCTTCCT 16575 ||||| || | ||||| ||||| Sbjct 83219 TCGTGGCGTGCTCAAGATTTTCCT 83196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073311956045