Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq2 107 2e-18 seq1955 87.8 2e-12 >seq2 Length=528078 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| ||||| | || ||||| |||| ||| |||| || ||| | Sbjct 318163 AATGCAGATATTTGTCAAAACTCTCACCGGAAAGACGATCACCCTCGAGGTGGAGTCTTC 318104 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||| | ||||| || ||| || || || || || |||||||| || Sbjct 318103 TGACACCATCGACAATGTCAAGGCCAAAATTCAAGATAAGGAGGGAATTCCTCCCGACCA 318044 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 |||| | || |||| || || || || ||||| || | |||| | | ||||||||| Sbjct 318043 ACAGCGCCTCATTTTCGCTGGTAAACAGCTCGAGGACGGGAGAACCTTGTCCGATTATAA 317984 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAG 24198 ||||||||| ||||| || | ||| ||| Sbjct 317983 CATTCAAAAGGAATCCACCTTGCATCTAG 317955 >seq1955 Length=526780 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || || ||||| || | || || |||| ||||| | Sbjct 128030 ATGCAAATCTTCGTCAAGACCTTGACTGGGAAGACTATCACTCTCGAGGTCGAATCTTCG 128089 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| |||||| ||||| |||||||| ||||||||||| Sbjct 128090 GACACCATTGACAACGTCAAGGCTAAGATTCAGGACAAGGAAGGCATTCCTCCCGATCAG 128149 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | | ||||||||| ||||| |||| | | | | ||| || ||| Sbjct 128150 CAACGCCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGTTGTCCGACTACAAC 128209 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || || || ||||| || |||| Sbjct 128210 ATCCAGAAGGAATCGACCCTTCA 128232 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | ||||| || | || || ||||||||||| | | Sbjct 127574 ATGCAAATCTTTGTCAAGACTCTTACTGGCAAGACTATCACTCTCGAAGTCGAGTCGTCC 127633 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | ||||| ||||| ||||| |||||||| ||||| || || Sbjct 127634 GACACGATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 127693 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | | |||||||| ||||| |||| | | | || || || || Sbjct 127694 CAGCGCCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTCTCGGACTACAAT 127753 Query 24171 ATTCAAAAAGAATCTAC 24187 ||||| ||||| || || Sbjct 127754 ATTCAGAAAGAGTCGAC 127770 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || || || || || | || ||| |||| |||||| | Sbjct 127291 ATGCAAATCTTTGTCAAGACCTTGACCGGCAAGACTATCACCCTCGAGGTCGAGTCGTCG 127350 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||||||| | ||||| ||||| ||||| || ||||| |||||||| || Sbjct 127351 GATACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCCGACCAG 127410 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 || | || |||| || |||||||||||||| || | | | |||| | |||||||| Sbjct 127411 CAACGTCTCATTTTCGCTGGCAAGCAACTCGAGGACGGCCG-TACGTTGTCTGATTATAA 127469 Query 24170 CATTCAAAAAGAATCTAC 24187 || || || || || || Sbjct 127470 TATCCAGAAGGAGTCCAC 127487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429925179720075