Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1955 132 5e-26 seq2 125 7e-24 >seq1955 Length=526780 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || | || | ||||||||| || || ||||||||||| Sbjct 128537 CCGCCACGGAGACGGAGGACAAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAG 128478 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| |||||||| || || |||| | ||||||||| || |||||| Sbjct 128477 AGAGTACGACCGTCCTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCGGGAGGG 128418 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||||||| ||||| | || | || || | |||||||| Sbjct 128417 ATGCCCTCCTTGTCCTGGATTTTCGCCTTGACGTTGTCAATCGTGTCAGAGGACTCGACC 128358 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| | ||| || || || ||||| || ||||||||||||||| Sbjct 128357 TCGAGGGTGATGGTCTTGCCCGTGAGAGTCTTGACGAAAATCTGCATG 128310 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | ||||| || || || | ||| ||||||||| |||||||||||| Sbjct 128766 GCCTCCACGGAGACGCAAGACCAAGTGAAGGGTGCTCTCCTTTTGGATGTTGTAATCGGA 128707 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||||| || || ||||||||||| || |||| || ||||||||||| || || Sbjct 128706 AAGGGTGCGCCCATCTTCGAGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCGGGTGG 128647 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||| || || || || ||| ||| | | || | || || | |||||||| Sbjct 128646 GATTCCCTCCTTATCTTGAATCTTCGCCTTCACGTTATCAATCGTGTCCGAGGACTCGAC 128587 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || || ||||| || || || |||||||||||||| Sbjct 128586 TTCCAACGTAATAGTCTTGCCGGTAAGCGTCTTGACGAAAATCTGCAT 128539 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || | ||| | |||||||| || ||||| ||||| || Sbjct 127800 CCGCCACGGAGACGAAGGACGAGATGGAGAGTCGACTCTTTCTGAATATTGTAGTCCGAG 127741 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| || |||| | ||||||||||| ||||| Sbjct 127740 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCAGGAGGA 127681 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | || | || |||| ||||||| Sbjct 127680 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTATCGATCGTGTCGGACGACTCGACT 127621 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| || | || || || || ||||| || || || || |||||| Sbjct 127620 TCGAGAGTGATAGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCATG 127573 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| ||| || || | || | ||||||||||||||| || ||||| || Sbjct 128028 CCACCGCGCAGACGAAGGACAAGGTGGAGGGTCGACTCCTTTTGGATATTGTAGTCCGAA 127969 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| || || ||||| || |||| | ||| || ||||| ||||| Sbjct 127968 AGGGTACGGCCATCCTCGAGTTGTTTGCCAGCAAAGATAAGACGTTGTTGGTCGGGAGGA 127909 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||| | | || | || || | ||||| | Sbjct 127908 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATTGTGTCCGAAGACTCAACC 127849 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || || || || || || |||||||| Sbjct 127848 TCCAACGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 127802 >seq2 Length=528078 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| || || | ||| ||||| ||||| || || ||||| Sbjct 317139 CCACCACGGAGACGGAGCACCAAGTGGAGGGTTGACTCTTTTTGGATATTATAATCCGAA 317198 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| || ||||| ||||| || ||| Sbjct 317199 AGAGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAATCGCTGTTGGTCAGGTGGG 317258 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || ||| ||| ||| | | || | || || | |||||||| Sbjct 317259 ATGCCTTCCTTATCCTGGATCTTCGCCTTCACGTTGTCAATGGTGTCAGAGGACTCGACC 317318 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | || || ||||| || ||||| || || |||||||| Sbjct 317319 TCGAGGGTGATCGTCTTCCCGGTGAGCGTTTTCACAAAGATCTGCAT 317365 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | || || || | ||| | |||||||||||||| || ||||| || | Sbjct 317367 CCACCGCGTAGGCGAAGGACAAGATGCAACGTCGACTCCTTTTGGATATTGTAGTCAGAC 317426 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | |||||| || ||||| || ||| |||| | ||||||||||| |||||| Sbjct 317427 AATGTCCTGCCGTCCTCAAGTTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCAGGAGGG 317486 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || ||| |||| | || | ||||| | || |||| Sbjct 317487 ATGCCTTCCTTGTCCTGAATCTTCGCTTTGACATTGTCAATGGTATCAGACGATTCGACC 317546 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | |||| || || ||||| | ||| || ||||| ||||||||| Sbjct 317547 TCAAGAGTAATAGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCATG 317594 Score = 109 bits (120), Expect = 5e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 131027 CTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTA 131086 ||| ||| | ||| || |||||||||||||| |||||| || ||| | | |||||| | Sbjct 317955 CTAGATGCAAGGTGGATTCCTTTTGAATGTTATAATCGGACAAGGTTCTCCCGTCCTCGA 318014 Query 131087 GCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGA 131146 |||| || || ||| | || | ||||| ||||| ||||| ||||| || || || | Sbjct 318015 GCTGTTTACCAGCGAAAATGAGGCGCTGTTGGTCGGGAGGAATTCCCTCCTTATCTTGAA 318074 Query 131147 TTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTAC 131206 |||| ||||| | || | || || | ||||| | |||| ||| | || || | Sbjct 318075 TTTTGGCCTTGACATTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATCGTCTTTC 318134 Query 131207 CGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| |||||||| || || |||||||| Sbjct 318135 CGGTGAGAGTTTTGACAAATATCTGCAT 318162 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 ||| |||||||| || || || || || | |||||| ||| || |||||||| || Sbjct 317687 GGTGGACTCCTTCTGGATATTATAGTCAGAGAGGGTGCGGCCGTCTTCGAGCTGCTTCCC 317746 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTG-CT 131155 || |||| | ||||||||||| ||||| || || || || || ||| | | || || Sbjct 317747 AGCAAAGATGAGCCGCTGCTGGTCAGGAGGAATCCCCTCCTTATC-CTGAATCTTTGCCT 317805 Query 131156 TGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAG 131215 ||| | || | ||| |||| || |||| |||| |||| ||| || || || | || Sbjct 317806 TGACATTGTCGATAGTGTCGGACGATTCGACCTCGAGTGTAATGGTCTTGCCCGTCAAAG 317865 Query 131216 TTTTTACGAAAATCTGCAT 131234 | || || || |||||||| Sbjct 317866 TCTTGACAAAGATCTGCAT 317884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472000616169600