Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq2 114 1e-20 seq1955 95.1 1e-14 >seq2 Length=528078 Score = 114 bits (126), Expect = 1e-20 Identities = 154/213 (72%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 16725 GTACC-ATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 ||||| | ||||| ||||| |||||||| ||||| || |||| || |||| | ||||| Sbjct 317951 GTACCTAGATGCAAGGTGGATTCCTTTTGAATGTTATAATCGGACAAGGTTCTCCCGTCC 318010 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | ||||| || || |||| || ||||||||||| ||| | ||||| || || Sbjct 318011 TCGAGCTGTTTACCAGCGAAAATGAGGCGCTGTTGGTCGGGAGGAATTCCCTCCTTATCT 318070 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||||| ||| || | | | | ||||| | |||| || | |||||| || Sbjct 318071 TGAATTTTGGCCTTGACATTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATCGTC 318130 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||||||| || ||||||||||| ||||||||| Sbjct 318131 TTTCCGGTGAGAGTTTTGACAAATATCTGCATT 318163 >seq1955 Length=526780 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || ||||||||||| || |||||||| | | ||| | | ||||| | |||| Sbjct 128004 TGGAGGGTCGACTCCTTTTGGATATTGTAGTCCGAAAGGGTACGGCCATCCTCGAGTTGT 127945 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| ||| | ||||| || |||||||| ||| | ||| || ||||| || || Sbjct 127944 TTGCCAGCAAAGATAAGACGTTGTTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTG 127885 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || |||||| | | | | ||||| | ||| |||| |||||||| || || | Sbjct 127884 GC--CTTCACATTGTCGATTGTGTCCGAAGACTCAACCTCCAACGTGATGGTCTTGCCCG 127827 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | || || |||||||| |||||||| Sbjct 127826 TGAGGGTCTTGACAAAGATCTGCAT 127802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405077805074350