Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1345 140 2e-28 seq375 107 1e-18 seq1955 87.8 1e-12 >seq1345 Length=198670 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 127997 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 128056 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 128057 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 128091 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 130452 CTCTCTCTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 130511 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 130512 GCCAATATTTAGCTTTA 130528 >seq375 Length=3361 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 26 CTCTCTCTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 85 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 86 GCCAATATTTAGCTTTA 102 >seq1955 Length=526780 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 || |||||| |||||| || ||||| ||||||||||| ||| |||| || | ||| Sbjct 127493 TGGAGAGTGGACTCCTTCTGGATATTATAATCAGACAACGTACGGCCGTCCTCGAGTTGC 127434 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || || || || || ||||| || |||| || | ||| || ||||| || || Sbjct 127433 TTGCCAGCGAAAATGAGACGTTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTGGATCTTG 127374 Query 38235 TGCTTCACATTCTGGACAGTATCTCCAC-TTTCAACTTCTAATGTAATAGTTTTACCCGT 38293 ||| || || | || ||||| | || || || || | || ||||| || || || Sbjct 127373 GCCTTGACGTTGTCGATGGTATC-CGACGACTCGACCTCGAGGGTGATAGTCTTGCCGGT 127315 Query 38294 CAAGGTTTTCACGAATATCTGCATGTTTTA 38323 |||||| || || || || |||||| |||| Sbjct 127314 CAAGGTCTTGACAAAGATTTGCATGATTTA 127285 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 |||||| ||||| ||||| |||||||||||||| || |||||||| || | || | Sbjct 128754 ACGCAAGACCAAGTGAAGGGTGCTCTCCTTTTGGATGTTGTAATCGGAAAGGGTGCGCCC 128695 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || || | || || |||||||| || | || || || |||| |||| || || || Sbjct 128694 ATCTTCGAGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCGGGTGGGATTCCCTCCTT 128635 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 || ||| || |||||| || | | || || || ||||| || ||||| Sbjct 128634 ATCTTGAATCTTCGCCTTCACGTTATCAATCGTGTCCGAGGACTCGACTTCCAACGTAAT 128575 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| || || || | || || ||||| |||||||| Sbjct 128574 AGTCTTGCCGGTAAGCGTCTTGACGAAAATCTGCAT 128539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334938770321015