Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1955 129 5e-25 seq2 118 9e-22 >seq1955 Length=526780 Score = 129 bits (142), Expect = 5e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| |||||| | || || || | ||||| ||||||| |||||||| Sbjct 127574 ATGCAAATCTTTGTCAAGACTCTTACTGGCAAGACTATCACTCTCGAAGTCGAGTCGTCC 127633 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | || | ||| || ||| ||||| ||||| ||||| |||||||| Sbjct 127634 GACACGATCGA-TAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCA 127692 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||| ||||| || | || |||| |||||| | || ||||| Sbjct 127693 GCAGCGCCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTCTCGGACTACAA 127752 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| ||||| || || || ||| | || || Sbjct 127753 TATTCAGAAAGAGTCGACTCTCCATCTCGTCCT 127785 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/207 (71%), Gaps = 8/207 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| ||||| || || | ||||| |||| || || || || Sbjct 128030 ATGCAAATCTTCGTCAAGACCTTGACTGGGAAGACTATCACTCTCGAGGTCGAATCTTCG 128089 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| | || || | ||| ||||| ||||| ||||| || || Sbjct 128090 GACACCATTGACAACGTCA---AGGCTAAGATTCAG-GACAAGGAAGGCATTCCTCCCGA 128145 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || || || | || ||||||||||| || | || |||| ||||| || ||| || Sbjct 128146 TCAGCAACGCCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGTTGTCCGACTA 128205 Query 25175 CAATATTCAAAAAGAATCCACGCTACA 25201 ||| || || || ||||| || || || Sbjct 128206 CAACATCCAGAAGGAATCGACCCTTCA 128232 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||| || | || || | ||||| ||||| || Sbjct 128539 ATGCAGATTTTCGTCAAGACGCTTACCGGCAAGACTATTACGTTGGAAGTCGAGTCCTCG 128598 Query 25059 GACACTATCGAGTCAC-TGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || | || ||||| | || | ||| || || || || || ||||| |||| Sbjct 128599 GACACGATTGA-TAACGTGAAGGCGAAGATTCAA-GATAAGGAGGGAATCCCACCCGACC 128656 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || ||||||||||| || | ||||||| ||||| | |||||||| Sbjct 128657 AGCAGCGATTGATCTTTGCCGGCAAGCAGCTCGAAGATGGGCGCACCCTTTCCGATTACA 128716 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGT 25207 | || ||||| || ||| || || || || Sbjct 128717 ACATCCAAAAGGAGAGCACCCTTCACTTGGT 128747 >seq2 Length=528078 Score = 118 bits (130), Expect = 9e-22 Identities = 152/207 (73%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||||||||| || || |||| ||| |||| || || ||||| Sbjct 317885 AATGCAGATCTTTGTCAAGACTTTGACGGGCAAGACCATTACACTCGAGGTCGAATCGTC 317826 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||||||||| || || | ||||| | ||| || || || |||||||| ||||| Sbjct 317825 CGACACTATCGA--CAATGTCAAGGCAAAGATTCA-GGATAAGGAGGGGATTCCTCCTGA 317769 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| |||||| | || ||||| || || || | ||||| | ||||| | || || Sbjct 317768 CCAGCAGCGGCTCATCTTTGCTGGGAAGCAGCTCGAAGACGGCCGCACCCTCTCTGACTA 317709 Query 25175 CAATATTCAAAAAGAATCCACGCTACA 25201 ||||| || || || ||||| || || Sbjct 317708 TAATATCCAGAAGGAGTCCACCCTTCA 317682 Score = 118 bits (130), Expect = 9e-22 Identities = 155/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| |||||||| || ||| | ||||| || | ||||| |||| |||||||| || Sbjct 318163 AATGCAGATATTTGTCAAAACTCTCACCGGAAAGACGATCACCCTCGAGGTGGAGTCTTC 318104 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||| ||||| || || | || |||| ||| || || || || ||||| || || Sbjct 318103 TGACACCATCGA--CAATGTCAAGGCCAAAATTCAA-GATAAGGAGGGAATTCCTCCCGA 318047 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||||||| | ||||| || || ||||| | || || | | || || |||||| Sbjct 318046 CCAACAGCGCCTCATTTTCGCTGGTAAACAGCTCGAGGACGGGAGAACCTTGTCCGATTA 317987 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAG 25206 || |||||||| |||||||| | ||| ||| Sbjct 317986 TAACATTCAAAAGGAATCCACCTTGCATCTAG 317955 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | ||||| || | ||||| |||| || ||||| ||| Sbjct 317365 ATGCAGATCTTTGTGAAAACGCTCACCGGGAAGACGATCACCCTCGAGGTCGAGTCCTCT 317306 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || ||||| || ||| || || ||||| || |||||||||||| Sbjct 317305 GACACCATTGACAACGTGAAGGCGAAGATCCAGGATAAGGAAGGCATCCCACCTGACCAA 317246 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || ||||| || | || || | ||||||| | ||||| ||| Sbjct 317245 CAGCGATTGATCTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACTCTTTCGGATTATAAT 317186 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || |||||||| || || || || || ||||| Sbjct 317185 ATCCAAAAAGAGTCAACCCTCCACTTGGTGCT 317154 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||| || | || || | || || || |||||| Sbjct 317593 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACTATTACTCTTGAGGTCGAATCGTCT 317534 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || || || |||| || | ||| ||||| ||||| || || |||||| Sbjct 317533 GATACCATTGA--CAATGTCAAAGCGAAGATTCA-GGACAAGGAAGGCATCCCTCCTGAC 317477 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || |||||| | || || ||||| || ||| | || || | | || || || ||| Sbjct 317476 CAGCAGCGGCTCATCTTCGCCGGGAAGCAACTTGAGGACGGCAGGACATTGTCTGACTAC 317417 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| ||||| || || ||| | ||| | || || Sbjct 317416 AATATCCAAAAGGAGTCGACGTTGCATCTTGTCCT 317382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433317094352975