Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2 145 6e-30 seq1955 134 1e-26 seq1724 84.2 2e-11 >seq2 Length=528078 Score = 145 bits (160), Expect = 6e-30 Identities = 157/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| |||||| | ||||| || ||| |||| || || ||||| | | Sbjct 318162 ATGCAGATATTTGTCAAAACTCTCACCGGAAAGACGATCACCCTCGAGGTGGAGTCTTCT 318103 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| ||||||||||| |||||||| ||||| ||||| ||| Sbjct 318102 GACACCATCGACAATGTCAAGGCCAAAATTCAAGATAAGGAGGGAATTCCTCCCGACCAA 318043 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || || |||||| | ||||| | ||| | |||||||| ||| Sbjct 318042 CAGCGCCTCATTTTCGCTGGTAAACAGCTCGAGGACGGGAGAACCTTGTCCGATTATAAC 317983 Query 22399 ATTCAAAAAGAATCCACCATACATTTAG 22426 |||||||| ||||||||| | ||| ||| Sbjct 317982 ATTCAAAAGGAATCCACCTTGCATCTAG 317955 >seq1955 Length=526780 Score = 134 bits (148), Expect = 1e-26 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||| || || || || || || || || || ||||||| || || ||| | | Sbjct 128029 GATGCAAATCTTCGTCAAGACCTTGACTGGGAAGACTATCACTCTCGAGGTCGAATCTTC 128088 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | ||| | |||| || ||||| |||||||| || ||||| |||||||| Sbjct 128089 GGACACCATTGACAACGTCAAGGCTAAGATTCAGGACAAGGAAGGCATTCCTCCCGATCA 128148 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||||| || || ||||||||||| ||| | |||||| |||||| | ||||| ||||| Sbjct 128149 GCAACGCCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGTTGTCCGACTACAA 128208 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || || ||||| ||| Sbjct 128209 CATCCAGAAGGAATCGACC 128227 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || || ||||| || || |||| || || || || | | Sbjct 127291 ATGCAAATCTTTGTCAAGACCTTGACCGGCAAGACTATCACCCTCGAGGTCGAGTCGTCG 127350 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | |||| || || |||||||||||||| ||||| ||||| || Sbjct 127351 GATACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCCGACCAG 127410 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || || ||||| || | ||||| ||| || | || ||||| || Sbjct 127411 CAACGTCTCATTTTCGCTGGCAAGCAACTCGAGGACGGCCGTACGTTGTCTGATTATAAT 127470 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 127471 ATCCAGAAGGAGTCCAC 127487 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | ||||| || || | || | ||||| || || | Sbjct 128539 ATGCAGATTTTCGTCAAGACGCTTACCGGCAAGACTATTACGTTGGAAGTCGAGTCCTCG 128598 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || |||||||| |||||||| || |||||||| || Sbjct 128599 GACACGATTGATAACGTGAAGGCGAAGATTCAAGATAAGGAGGGAATCCCACCCGACCAG 128658 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || ||||||||||| ||| | || ||| |||||| | |||||||||||| Sbjct 128659 CAGCGATTGATCTTTGCCGGCAAGCAGCTCGAAGATGGGCGCACCCTTTCCGATTACAAC 128718 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || ||||| || |||| | || || || ||||| | || ||||| Sbjct 128719 ATCCAAAAGGAGAGCACCCTTCACTTGGTCTTGCGTCTCCGTGGAGG 128765 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || ||| | || || || || |||| || || || || || | Sbjct 128311 ATGCAGATTTTCGTCAAGACTCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCT 128370 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| ||||| || ||||||||||| || || |||||||| Sbjct 128371 GACACGATTGACAACGTCAAGGCGAAAATCCAGGACAAGGAGGGCATCCCTCCCGATCAG 128430 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| || || ||| | ||||| || || |||| ||||||||| Sbjct 128431 CAGCGTCTCATCTTTGCTGGAAAGCAGCTCGAGGACGGTCGTACTCTCTCGGATTACAAC 128490 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| || ||| Sbjct 128491 ATCCAGAAAGAGTCGACC 128508 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || |||| | || || || | | Sbjct 127802 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACCATCACGTTGGAGGTTGAGTCTTCG 127861 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || | || || || || |||||||| || ||||| ||||| ||| Sbjct 127862 GACACAATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAA 127921 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| ||||| |||||||| | |||||| ||| ||| | || || ||||| Sbjct 127922 CAACGTCTTATCTTTGCTGGCAAACAACTCGAGGATGGCCGTACCCTTTCGGACTACAAT 127981 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || ||||| || || ||| | || | || | || ||||||| || Sbjct 127982 ATCCAAAAGGAGTCGACCCTCCACCTTGTCCTTCGTCTGCGCGGTGG 128028 >seq1724 Length=14637 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || ||||| |||| || || ||| |||| ||||| |||||| | | Sbjct 11542 GATGCAGATATTCGTCAAAACCCTAACGGGGAAGACGATCACCCTTGAGGTGGAATCTTC 11483 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 |||||| | ||| || | || || |||||||| ||||||||||| || ||||| || Sbjct 11482 CGATACTATCGACAATGTTAAGGCCAAGATTCAAGATAAGGAGGGTATCCCCCCCGACCA 11423 Query 22338 ACAACG 22343 || || Sbjct 11422 GCAGCG 11417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419717436626725