Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoctonia_20solani_20[genbank_20GCA_5F001286725.1_202015-08-31] 2,065 sequences; 56,028,462 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1169 104 5e-17 seq1112 87.8 4e-12 >seq1169 Length=60933 Score = 104 bits (114), Expect = 5e-17 Identities = 136/188 (72%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC 280232 ||| | |||||||| ||| | || ||||| ||||| |||| | || | |||||| | Sbjct 44418 GTCCTCGGACCCAACGGTTCCGGCAAGTCGACCCTCGTCAAGCTGCTCATTGGCGACCTC 44359 Query 280233 CAGGCCACTGAGGGGTCCG---TTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 |||||| |||| || | |||||||| |||||| || || | |||||||| Sbjct 44358 GAGGCCAACAAGGGCGGCGAGGTCTGGAAGCACCCCAACTTGGTCATCGGCTACGTCGCC 44299 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAG 280349 ||||||||||||||||| ||||| |||| || |||| |||||| | | ||||| | Sbjct 44298 CAGCACGCTTTCCACCATATCGATCACCATCTCGACAAGACTCCCCTCGAGTACATGTTG 44239 Query 280350 TGGCGCTA 280357 ||||| || Sbjct 44238 TGGCGTTA 44231 Score = 96.9 bits (106), Expect = 7e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 279344 AGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAA 279403 |||||| ||| |||| |||| | ||||||||||| ||||||| ||||| || | || Sbjct 45342 AGGTGAAGATTTGTGCAACTGCCAGTTCTCGCTCGCCTATGGTGCCAAGATCCTCTTGAA 45283 Query 279404 CTCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGC 279463 | || || |||| | ||||||| ||| |||| || |||||| ||||| ||| || | Sbjct 45282 CACTGCCAACCTCCGCCTCAAGCGCGGCCACCGCTACGGTCTCTGCGGTCGCAACGGTTC 45223 Query 279464 GGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGG 279499 || ||| || || |||||||||||| | || || Sbjct 45222 CGGCAAGTCGACGCTCATGCGCGCCATTACCAATGG 45187 Score = 93.3 bits (102), Expect = 9e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 280680 GGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAG 280739 ||||| || ||||||||| || ||| ||| |||||||| ||||| ||||| ||| Sbjct 43838 GGTCTCGAGCCCGAGTTTGTCACCCACAACACCATGCGCGGTCTCTCTGGTGGCCAAAAG 43779 Query 280740 GTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAG 280799 ||||| | ||| |||| || || |||| | ||| ||||| ||| ||||||||| Sbjct 43778 GTCAAGATCGTCCTCGGTGCTGCCACCTGGCGCCGCCCCCACGTCATCTGCCTCGACGAG 43719 Query 280800 CCTACCAACTATCTGGACCGCGAG 280823 || |||||||| || || |||||| Sbjct 43718 CCCACCAACTACCTCGATCGCGAG 43695 >seq1112 Length=1085269 Score = 87.8 bits (96), Expect = 4e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903 ||||| |||||||| ||| ||| | |||||||| | |||||||||||||| || Sbjct 231475 GTGCATTCCCTCGTCACGAGAGATCAGTTCGTTGGAGAATGTCAGGCCAGGCATCAATCC 231416 Query 251904 ACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACA 251963 || ||| |||||||||| || | |||||| || ||||| | | ||||||||| | Sbjct 231415 GCGCTTCTTGAGCCAGAAAATAGAAGCAAAGGAACCGGAGAAGAAGATACCCTCGAC-CG 231357 Query 251964 CA-CCCATGCAACAAGGCGCTCAGCAAACG 251992 || | |||| || || ||||| ||||||| Sbjct 231356 CAGCAAATGCGACGAGACGCTCGGCAAACG 231327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027809605686665